Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002691A_C01 KMC002691A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG51006.1|AC069474_5 hypothetical protein; 96168-94294 [Arab... 44 0.001
ref|NP_566421.1| F-box protein family; protein id: At3g12350.1, ... 44 0.001
gb|AAM63646.1| unknown [Arabidopsis thaliana] 44 0.001
dbj|BAB03143.1| ankyrin-like protein [Arabidopsis thaliana] 44 0.002
ref|NP_703870.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.6
>gb|AAG51006.1|AC069474_5 hypothetical protein; 96168-94294 [Arabidopsis thaliana]
Length = 455
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/31 (58%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -3
Query: 240 GTFGFGFLRDMFVIDMKHI-VHDGCIVNAVQ 151
GTFGFGFLRD F+ID+K + + DGC+ + V+
Sbjct: 389 GTFGFGFLRDQFIIDLKRVALEDGCLADEVE 419
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 529 FWTSNAAFLESPFPLEEESLYDSRIHLQPHNDTHE 425
FWT F+ SPF EEE L +SRIH+ P + HE
Sbjct: 315 FWTPKHTFIRSPFSAEEELLLNSRIHISPFAEVHE 349
>ref|NP_566421.1| F-box protein family; protein id: At3g12350.1, supported by cDNA:
2596. [Arabidopsis thaliana] gi|25054871|gb|AAN71924.1|
putative F-box protein family [Arabidopsis thaliana]
Length = 422
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/31 (58%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -3
Query: 240 GTFGFGFLRDMFVIDMKHI-VHDGCIVNAVQ 151
GTFGFGFLRD F+ID+K + + DGC+ + V+
Sbjct: 389 GTFGFGFLRDQFIIDLKRVALEDGCLADEVE 419
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 529 FWTSNAAFLESPFPLEEESLYDSRIHLQPHNDTHE 425
FWT F+ SPF EEE L +SRIH+ P + HE
Sbjct: 315 FWTPKHTFIRSPFSAEEELLLNSRIHISPFAEVHE 349
>gb|AAM63646.1| unknown [Arabidopsis thaliana]
Length = 422
Score = 44.3 bits (103), Expect = 0.001
Identities = 18/31 (58%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -3
Query: 240 GTFGFGFLRDMFVIDMKHI-VHDGCIVNAVQ 151
GTFGFGFLRD F+ID+K + + DGC+ + V+
Sbjct: 389 GTFGFGFLRDQFIIDLKRVALEDGCLADEVE 419
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 529 FWTSNAAFLESPFPLEEESLYDSRIHLQPHNDTHE 425
FWT F+ SPF EEE L +SRIH+ P + HE
Sbjct: 315 FWTPKHTFIRSPFSAEEELLLNSRIHISPFAEVHE 349
>dbj|BAB03143.1| ankyrin-like protein [Arabidopsis thaliana]
Length = 1100
Score = 43.5 bits (101), Expect = 0.002
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 529 FWTSNAAFLESPFPLEEESLYDSRIHLQPHNDTHE 425
FWT F+ SPF EEE L +SRIH+ P + HE
Sbjct: 315 FWTPKHTFIRSPFSAEEELLLNSRIHISPFAEVHE 349
Score = 42.4 bits (98), Expect = 0.003
Identities = 17/28 (60%), Positives = 23/28 (81%), Gaps = 1/28 (3%)
Frame = -3
Query: 240 GTFGFGFLRDMFVIDMKHI-VHDGCIVN 160
GTFGFGFLRD F+ID+K + + DGC+ +
Sbjct: 389 GTFGFGFLRDQFIIDLKRVALEDGCLAD 416
>ref|NP_703870.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498531|emb|CAD50482.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1356
Score = 33.5 bits (75), Expect = 1.6
Identities = 28/78 (35%), Positives = 41/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 19 ILSKEIIIFHS*KY-NMPQVIGDIRLTNLSMNMKCRKNKINQQKELYCIHNTTIMDN-MF 192
I SKEI+I NM Q+I ++ LT L+ N +KNK N + +N +N ++
Sbjct: 1001 ISSKEILINDLCSILNMLQIILNLNLTGLTSNF-LKKNKNNNNNNINNNNNNNNSNNVLY 1059
Query: 193 HVYDKHVPKESETESTGH 246
H DK + ESET+ H
Sbjct: 1060 HTEDKTM--ESETDKREH 1075
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,697,186
Number of Sequences: 1393205
Number of extensions: 9776794
Number of successful extensions: 25384
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25379
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
