Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002688A_C01 KMC002688A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174029.1| unknown protein; protein id: At1g27090.1, suppo... 57 3e-07
sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 ... 43 6e-05
pir||JC7210 molluscan shell matrix protein N66 - Pinctada maxima 47 2e-04
dbj|BAA90540.1| N66 matrix protein [Pinctada maxima] 47 2e-04
sp|P24785|MLE_DROME Dosage compensation regulator (Male-less pro... 45 6e-04
>ref|NP_174029.1| unknown protein; protein id: At1g27090.1, supported by cDNA:
gi_18389239, supported by cDNA: gi_20259226 [Arabidopsis
thaliana] gi|8778876|gb|AAF79875.1|AC000348_28 T7N9.15
[Arabidopsis thaliana] gi|18389240|gb|AAL67063.1|
unknown protein [Arabidopsis thaliana]
gi|20259227|gb|AAM14329.1| unknown protein [Arabidopsis
thaliana]
Length = 420
Score = 56.6 bits (135), Expect = 3e-07
Identities = 36/61 (59%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Frame = -1
Query: 398 GVTSNGRG-RGGSRGGYYQNGRNQYADQPG-NYYPRNNYNNRGRGGRGSYGNNGSGGFVN 225
G NGRG RGG GG YQNGR + DQ G N Y RN YNNRGR GRG G G+G N
Sbjct: 353 GGYQNGRGGRGG--GGGYQNGRYESYDQSGGNGYQRNYYNNRGR-GRGGGGGGGNGHSYN 409
Query: 224 N 222
N
Sbjct: 410 N 410
Score = 36.6 bits (83), Expect(2) = 0.003
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Frame = -3
Query: 594 SDPERELQKEDVEAENAVEVEYVEHEQTNPQVAGELNQPDVDAKDQHYPRRGYQNQR--- 424
+D ++ + + VE EV + + EQ QV G N AK + PR YQNQR
Sbjct: 292 NDQSQQDEHQKVELVTEGEVVHGQQEQGYTQVGGAEN-----AKRDYVPRGSYQNQRGRR 346
Query: 423 -------------GGRGGGG 403
GGRGGGG
Sbjct: 347 GARRGGGGYQNGRGGRGGGG 366
Score = 25.8 bits (55), Expect(2) = 0.003
Identities = 11/23 (47%), Positives = 13/23 (55%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYAD 321
+ GRGRGG GG + N Y D
Sbjct: 391 NRGRGRGGGGGGGNGHSYNNYQD 413
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 (hnRNP A3(B))
gi|542650|pir||S40778 ribonucleoprotein - African clawed
frog gi|214747|gb|AAA49950.1| ribonucleoprotein
Length = 385
Score = 43.1 bits (100), Expect(2) = 6e-05
Identities = 23/52 (44%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Frame = -1
Query: 383 GRGRGGSRGGYYQ---NGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSG 237
G G GG RGG Y +G N + GNY Y RG GG YGN G G
Sbjct: 244 GYGGGGGRGGGYGGGGDGYNGFGGDGGNYGGGPGYGGRGYGGSPGYGNQGGG 295
Score = 33.9 bits (76), Expect = 1.9
Identities = 25/65 (38%), Positives = 29/65 (44%)
Frame = -1
Query: 398 GVTSNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNV 219
G SN GRGG+ GG G + + G + R Y G GGRG G G G N
Sbjct: 210 GGGSNFMGRGGNYGGGDGGGGGNFG-RGGGFGNRGGYG--GGGGRGG-GYGGGGDGYNGF 265
Query: 218 AGDVG 204
GD G
Sbjct: 266 GGDGG 270
Score = 25.0 bits (53), Expect(2) = 6e-05
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 456 HYPRRGYQNQRGGRGGGGRRG 394
++ R G RGG GGGG RG
Sbjct: 232 NFGRGGGFGNRGGYGGGGGRG 252
>pir||JC7210 molluscan shell matrix protein N66 - Pinctada maxima
Length = 568
Score = 47.0 bits (110), Expect = 2e-04
Identities = 25/62 (40%), Positives = 31/62 (49%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNVAGD 210
+NG G G+ GG NG N ++ N N NN GG G+ GNNG+G NN G
Sbjct: 336 NNGNGNNGNNGGNGNNGNNGNSNNGNN----GNGNNGNNGGNGNNGNNGNGNNENNGNGS 391
Query: 209 VG 204
G
Sbjct: 392 NG 393
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/65 (40%), Positives = 29/65 (44%)
Frame = -1
Query: 398 GVTSNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNV 219
G NG G G G NG N GN N NN GG G+ GNNG+G NN
Sbjct: 280 GNNGNGNGNNGYNGNNGYNGNNGNNGN-GNNDNNGNDNNGNNGGNGNNGNNGNGNNGNNG 338
Query: 218 AGDVG 204
G+ G
Sbjct: 339 NGNNG 343
Score = 41.6 bits (96), Expect = 0.009
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNVAGD 210
+NG G+ GG NG N + N N NN GG G+ GNNG+ NN G+
Sbjct: 311 NNGNDNNGNNGGNGNNGNNGNGNNGNN----GNGNNGNNGGNGNNGNNGNSNNGNNGNGN 366
Query: 209 VG 204
G
Sbjct: 367 NG 368
Score = 40.8 bits (94), Expect = 0.015
Identities = 21/56 (37%), Positives = 27/56 (47%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNN 222
+NG G G+ GG NG N + N N +N GG G+ GNNG G +N
Sbjct: 361 NNGNGNNGNNGGNGNNGNNGNGNNENN----GNGSNGNNGGNGNNGNNGDNGNGDN 412
Score = 38.1 bits (87), Expect = 0.098
Identities = 21/55 (38%), Positives = 23/55 (41%)
Frame = -1
Query: 368 GSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNVAGDVG 204
G G NG N D GN N NN G G GNNG+G N G+ G
Sbjct: 242 GDNGNNCDNGNNGNNDNNGNNGNNGNGNNGYNGNNGDNGNNGNGNGNNGYNGNNG 296
Score = 36.6 bits (83), Expect = 0.29
Identities = 24/72 (33%), Positives = 29/72 (39%), Gaps = 10/72 (13%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYN-NRGRGGRGSYGNNGS--------- 240
+NG G G G NG N + Y N YN N G G G+ NNG+
Sbjct: 264 NNGNGNNGYNGNNGDNGNNGNGNGNNGYNGNNGYNGNNGNNGNGNNDNNGNDNNGNNGGN 323
Query: 239 GGFVNNVAGDVG 204
G NN G+ G
Sbjct: 324 GNNGNNGNGNNG 335
Score = 35.4 bits (80), Expect = 0.64
Identities = 19/52 (36%), Positives = 22/52 (41%), Gaps = 1/52 (1%)
Frame = -1
Query: 386 NGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYN-NRGRGGRGSYGNNGSGG 234
NG G NG + + GN NN N N G G G+ GNNG G
Sbjct: 298 NGNNGNNGNGNNDNNGNDNNGNNGGNGNNGNNGNGNNGNNGNGNNGNNGGNG 349
>dbj|BAA90540.1| N66 matrix protein [Pinctada maxima]
Length = 568
Score = 47.0 bits (110), Expect = 2e-04
Identities = 25/62 (40%), Positives = 31/62 (49%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNVAGD 210
+NG G G+ GG NG N ++ N N NN GG G+ GNNG+G NN G
Sbjct: 336 NNGNGNNGNNGGNGNNGNNGNSNNGNN----GNGNNGNNGGNGNNGNNGNGNNENNGNGS 391
Query: 209 VG 204
G
Sbjct: 392 NG 393
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/65 (40%), Positives = 29/65 (44%)
Frame = -1
Query: 398 GVTSNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNV 219
G NG G G G NG N GN N NN GG G+ GNNG+G NN
Sbjct: 280 GNNGNGNGNNGYNGNNGYNGNNGNNGN-GNNDNNGNDNNGNNGGNGNNGNNGNGNNGNNG 338
Query: 218 AGDVG 204
G+ G
Sbjct: 339 NGNNG 343
Score = 41.6 bits (96), Expect = 0.009
Identities = 23/62 (37%), Positives = 29/62 (46%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNVAGD 210
+NG G+ GG NG N + N N NN GG G+ GNNG+ NN G+
Sbjct: 311 NNGNDNNGNNGGNGNNGNNGNGNNGNN----GNGNNGNNGGNGNNGNNGNSNNGNNGNGN 366
Query: 209 VG 204
G
Sbjct: 367 NG 368
Score = 40.8 bits (94), Expect = 0.015
Identities = 21/56 (37%), Positives = 27/56 (47%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNN 222
+NG G G+ GG NG N + N N +N GG G+ GNNG G +N
Sbjct: 361 NNGNGNNGNNGGNGNNGNNGNGNNENN----GNGSNGNNGGNGNNGNNGDNGNGDN 412
Score = 38.1 bits (87), Expect = 0.098
Identities = 21/55 (38%), Positives = 23/55 (41%)
Frame = -1
Query: 368 GSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNVAGDVG 204
G G NG N D GN N NN G G GNNG+G N G+ G
Sbjct: 242 GDNGNNCDNGNNGNNDNNGNNGNNGNGNNGYNGNNGDNGNNGNGNGNNGYNGNNG 296
Score = 36.6 bits (83), Expect = 0.29
Identities = 24/72 (33%), Positives = 29/72 (39%), Gaps = 10/72 (13%)
Frame = -1
Query: 389 SNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYN-NRGRGGRGSYGNNGS--------- 240
+NG G G G NG N + Y N YN N G G G+ NNG+
Sbjct: 264 NNGNGNNGYNGNNGDNGNNGNGNGNNGYNGNNGYNGNNGNNGNGNNDNNGNDNNGNNGGN 323
Query: 239 GGFVNNVAGDVG 204
G NN G+ G
Sbjct: 324 GNNGNNGNGNNG 335
Score = 35.4 bits (80), Expect = 0.64
Identities = 19/52 (36%), Positives = 22/52 (41%), Gaps = 1/52 (1%)
Frame = -1
Query: 386 NGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYN-NRGRGGRGSYGNNGSGG 234
NG G NG + + GN NN N N G G G+ GNNG G
Sbjct: 298 NGNNGNNGNGNNDNNGNDNNGNNGGNGNNGNNGNGNNGNNGNGNNGNNGGNG 349
>sp|P24785|MLE_DROME Dosage compensation regulator (Male-less protein) (No action
potential protein) gi|103239|pir||B40025 maleless
protein, long form - fruit fly (Drosophila melanogaster)
gi|157906|gb|AAC41573.1| maleless protein
Length = 1293
Score = 45.4 bits (106), Expect = 6e-04
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -1
Query: 398 GVTSNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGR---GSYGNNGSGGFV 228
G +NG G G + GGY G Y + G Y Y N G G R G YGNNG GG+
Sbjct: 1204 GYGNNGGGYGNNGGGYGNIGGG-YGNNAGGYGNNGGYGNNGGGYRNNGGGYGNNG-GGYG 1261
Query: 227 NNVAG 213
NN G
Sbjct: 1262 NNRGG 1266
Score = 39.7 bits (91), Expect = 0.034
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 380 RGRGGSRGGYYQNGRNQYADQPGNY-YPRNNYNNR--GRGGRGSYGNNGSGGFVNNVAG 213
RG G + GG Y N Y + G Y Y N G G G YGNNG GG+ NN G
Sbjct: 1195 RGNGRTFGGGYGNNGGGYGNNGGGYGNIGGGYGNNAGGYGNNGGYGNNG-GGYRNNGGG 1252
Score = 35.4 bits (80), Expect = 0.64
Identities = 26/65 (40%), Positives = 28/65 (43%)
Frame = -1
Query: 398 GVTSNGRGRGGSRGGYYQNGRNQYADQPGNYYPRNNYNNRGRGGRGSYGNNGSGGFVNNV 219
G N G G + GGY NG Y + G Y NNRG G N GSGG N
Sbjct: 1231 GGYGNNGGYGNNGGGYRNNG-GGYGNNGGGY-----GNNRGGFGDSFESNRGSGGGFRN- 1283
Query: 218 AGDVG 204
GD G
Sbjct: 1284 -GDQG 1287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,781,942
Number of Sequences: 1393205
Number of extensions: 15936811
Number of successful extensions: 115750
Number of sequences better than 10.0: 1062
Number of HSP's better than 10.0 without gapping: 66654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101611
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
