Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002687A_C01 KMC002687A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174479.1| DEAD/DEAH box RNA helicase, putative; protein i... 175 3e-43
pir||T51739 RNA helicase RH5 [imported] - Arabidopsis thaliana ... 173 1e-42
ref|NP_011437.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH... 123 1e-27
gb|EAA30806.1| hypothetical protein [Neurospora crassa] 107 8e-23
ref|NP_596388.1| putative atp-dependent rna helicase [Schizosacc... 103 1e-21
>ref|NP_174479.1| DEAD/DEAH box RNA helicase, putative; protein id: At1g31970.1,
supported by cDNA: gi_19347811 [Arabidopsis thaliana]
gi|25290841|pir||A86444 probable RNA helicase [imported]
- Arabidopsis thaliana
gi|12321302|gb|AAG50723.1|AC079041_16 p68 RNA helicase,
putative [Arabidopsis thaliana]
gi|12321459|gb|AAG50784.1|AC074309_1 RNA helicase,
putative [Arabidopsis thaliana]
gi|19347812|gb|AAL86356.1| putative p68 RNA helicase
[Arabidopsis thaliana] gi|21436171|gb|AAM51373.1|
putative p68 RNA helicase [Arabidopsis thaliana]
Length = 537
Score = 175 bits (444), Expect = 3e-43
Identities = 87/100 (87%), Positives = 90/100 (90%)
Frame = -1
Query: 571 VINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREANQVVPDDLL 392
VINY+FPLTTEDYVHRIGRTGRAGKKGVAHTFFT NKGLAGELVNVLREA QVVP DLL
Sbjct: 438 VINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLL 497
Query: 391 KFGTHVKKKESKLYGAHFKEIPVDAMKSQKIKFADSDDED 272
KFGTHVKKKESKLYGAHFKEI DA K+ KI F +SDDED
Sbjct: 498 KFGTHVKKKESKLYGAHFKEIAADAPKATKITFDNSDDED 537
>pir||T51739 RNA helicase RH5 [imported] - Arabidopsis thaliana (fragment)
gi|3775989|emb|CAA09197.1| RNA helicase [Arabidopsis
thaliana]
Length = 411
Score = 173 bits (439), Expect = 1e-42
Identities = 86/100 (86%), Positives = 90/100 (90%)
Frame = -1
Query: 571 VINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREANQVVPDDLL 392
VINY+FPLTTEDYVHRIGRTGRAGKKGVAHTFFT NKGLAGELVNVLREA QVVP DLL
Sbjct: 312 VINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVVPADLL 371
Query: 391 KFGTHVKKKESKLYGAHFKEIPVDAMKSQKIKFADSDDED 272
KFGTHVKKKESKLYGAHFKEI DA K+ KI F +SDDE+
Sbjct: 372 KFGTHVKKKESKLYGAHFKEIAADAPKATKITFDNSDDEN 411
>ref|NP_011437.1| ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family; Dbp3p
[Saccharomyces cerevisiae]
gi|1708151|sp|P20447|DBP3_YEAST Probable ATP-dependent
RNA helicase DBP3 (Helicase CA3) gi|320699|pir||S30805
probable RNA helicase CA3 - yeast (Saccharomyces
cerevisiae) gi|172582|gb|AAA73137.1| [Saccharomyces
cerevisiae gene, complete cds.], gene product
gi|1322595|emb|CAA96783.1| ORF YGL078c [Saccharomyces
cerevisiae]
Length = 523
Score = 123 bits (309), Expect = 1e-27
Identities = 61/93 (65%), Positives = 71/93 (75%)
Frame = -1
Query: 571 VINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREANQVVPDDLL 392
VIN +FPLT EDYVHRIGRTGRAG+ G AHT FT+Q K LAG LVNVL ANQ VP+DL+
Sbjct: 431 VINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLI 490
Query: 391 KFGTHVKKKESKLYGAHFKEIPVDAMKSQKIKF 293
KFGTH KKKE YG+ FK++ + K +KI F
Sbjct: 491 KFGTHTKKKEHSAYGSFFKDVDL-TKKPKKITF 522
>gb|EAA30806.1| hypothetical protein [Neurospora crassa]
Length = 614
Score = 107 bits (268), Expect = 8e-23
Identities = 56/93 (60%), Positives = 68/93 (72%)
Frame = -1
Query: 571 VINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREANQVVPDDLL 392
VIN +FPLT EDYVHRIGRTGRAGK G A T FT+ +K +G LVN+LR A Q VP++LL
Sbjct: 522 VINVTFPLTIEDYVHRIGRTGRAGKLGKAITLFTEHDKAHSGSLVNILRAAKQPVPEELL 581
Query: 391 KFGTHVKKKESKLYGAHFKEIPVDAMKSQKIKF 293
KFGT VKKK YG+ +K+I + K+ KI F
Sbjct: 582 KFGTTVKKKAHDAYGSFYKDIDPN-KKATKITF 613
>ref|NP_596388.1| putative atp-dependent rna helicase [Schizosaccharomyces pombe]
gi|1723271|sp|Q10202|YBX6_SCHPO Putative ATP-dependent
RNA helicase C17D1.06 gi|2130219|pir||S67386 probable
ATP-dependent RNA helicase - fission yeast
(Schizosaccharomyces pombe) gi|3451298|emb|CAA20430.1|
putative ATP-dependent RNA helicase; similar to S.
cerevisiae DBP3 [Schizosaccharomyces pombe]
Length = 578
Score = 103 bits (258), Expect = 1e-21
Identities = 54/85 (63%), Positives = 62/85 (72%)
Frame = -1
Query: 571 VINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREANQVVPDDLL 392
VIN +FPLT EDYVHRIGRTGRA KG A TFFT Q+K AGELVNVLR+A Q +P+ L
Sbjct: 488 VINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLF 547
Query: 391 KFGTHVKKKESKLYGAHFKEIPVDA 317
KFGT VK K YG+ ++PV A
Sbjct: 548 KFGTAVKPK-LNAYGSRVVDVPVKA 571
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,365,245
Number of Sequences: 1393205
Number of extensions: 8641108
Number of successful extensions: 38874
Number of sequences better than 10.0: 1248
Number of HSP's better than 10.0 without gapping: 23485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35332
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
