Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002685A_C02 KMC002685A_c02
(748 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S58282 dTDP-glucose 4-6-dehydratase homolog D18 - Arabidops... 155 8e-37
ref|NP_191842.1| dTDP-glucose 4-6-dehydratase homolog D18; prote... 155 8e-37
ref|NP_182287.1| putative dTDP-glucose 4-6-dehydratase; protein ... 150 1e-35
gb|AAL65400.1| dTDP-glucose 4-6-dehydratase-like protein [Oryza ... 144 1e-33
ref|NP_190920.1| dTDP-glucose 4-6-dehydratase -like protein; pro... 125 8e-28
>pir||S58282 dTDP-glucose 4-6-dehydratase homolog D18 - Arabidopsis thaliana
gi|928932|emb|CAA89205.1| homolog of dTDP-glucose
4-6-dehydratases [Arabidopsis thaliana]
gi|13605583|gb|AAK32785.1|AF361617_1 AT3g62830/F26K9_260
[Arabidopsis thaliana]
gi|14595664|gb|AAK70881.1|AF387788_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
gi|1585435|prf||2124427B diamide resistance gene
Length = 445
Score = 155 bits (391), Expect = 8e-37
Identities = 71/86 (82%), Positives = 79/86 (91%)
Frame = -3
Query: 746 FNLGNPGEFTMLELAKVVQETIDPDAKIEYRPNTEDDPHKRKPDIDRAKELLGWEPKLDL 567
FNLGNPGEFTMLELAKVVQETIDP+A IE+RPNTEDDPHKRKPDI +AKELLGWEPK+ L
Sbjct: 351 FNLGNPGEFTMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSL 410
Query: 566 HKGLPLMVSDFRQRIFGDHKEGATVA 489
+GLPLMV DFRQR+FGD KEG++ A
Sbjct: 411 RQGLPLMVKDFRQRVFGDQKEGSSAA 436
>ref|NP_191842.1| dTDP-glucose 4-6-dehydratase homolog D18; protein id: At3g62830.1
[Arabidopsis thaliana] gi|11270077|pir||T48072
dTDP-glucose 4-6-dehydratase homolog D18 - Arabidopsis
thaliana gi|7362763|emb|CAB83133.1| dTDP-glucose
4-6-dehydratase homolog D18 [Arabidopsis thaliana]
gi|23505953|gb|AAN28836.1| At3g62830/F26K9_260
[Arabidopsis thaliana]
Length = 445
Score = 155 bits (391), Expect = 8e-37
Identities = 71/86 (82%), Positives = 79/86 (91%)
Frame = -3
Query: 746 FNLGNPGEFTMLELAKVVQETIDPDAKIEYRPNTEDDPHKRKPDIDRAKELLGWEPKLDL 567
FNLGNPGEFTMLELAKVVQETIDP+A IE+RPNTEDDPHKRKPDI +AKELLGWEPK+ L
Sbjct: 351 FNLGNPGEFTMLELAKVVQETIDPNANIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSL 410
Query: 566 HKGLPLMVSDFRQRIFGDHKEGATVA 489
+GLPLMV DFRQR+FGD KEG++ A
Sbjct: 411 RQGLPLMVKDFRQRVFGDQKEGSSAA 436
>ref|NP_182287.1| putative dTDP-glucose 4-6-dehydratase; protein id: At2g47650.1
[Arabidopsis thaliana] gi|7437249|pir||T00419
dTDP-glucose 4-6-dehydratase homolog At2g47650 -
Arabidopsis thaliana gi|20196965|gb|AAM14846.1| putative
dTDP-glucose 4-6-dehydratase [Arabidopsis thaliana]
Length = 443
Score = 150 bits (380), Expect = 1e-35
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = -3
Query: 746 FNLGNPGEFTMLELAKVVQETIDPDAKIEYRPNTEDDPHKRKPDIDRAKELLGWEPKLDL 567
FNLGNPGEFTMLELAKVVQETIDP+AKIE+RPNTEDDPHKRKPDI +AKELLGWEPK+ L
Sbjct: 353 FNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVAL 412
Query: 566 HKGLPLMVSDFRQRIFGDHKEGAT 495
+GLPLMV DFRQR+FGD K+ ++
Sbjct: 413 RQGLPLMVKDFRQRVFGDQKQDSS 436
>gb|AAL65400.1| dTDP-glucose 4-6-dehydratase-like protein [Oryza sativa]
Length = 231
Score = 144 bits (363), Expect = 1e-33
Identities = 66/80 (82%), Positives = 75/80 (93%)
Frame = -3
Query: 746 FNLGNPGEFTMLELAKVVQETIDPDAKIEYRPNTEDDPHKRKPDIDRAKELLGWEPKLDL 567
FNLGNPGEFTMLELAKVVQ+TIDP+A+IE+RPNT DDPHKRKPDI RAKELLGWEPK+ L
Sbjct: 151 FNLGNPGEFTMLELAKVVQDTIDPNARIEFRPNTADDPHKRKPDITRAKELLGWEPKVPL 210
Query: 566 HKGLPLMVSDFRQRIFGDHK 507
+GLPLMV+DFR+RIFGD +
Sbjct: 211 REGLPLMVTDFRKRIFGDQE 230
>ref|NP_190920.1| dTDP-glucose 4-6-dehydratase -like protein; protein id: At3g53520.1
[Arabidopsis thaliana] gi|11270116|pir||T45892
dTDP-glucose 4-6-dehydratase-like protein - Arabidopsis
thaliana gi|6729503|emb|CAB67659.1| dTDP-glucose
4-6-dehydratase-like protein [Arabidopsis thaliana]
gi|14595662|gb|AAK70880.1|AF387787_1 UDP-glucuronic acid
decarboxylase [Arabidopsis thaliana]
Length = 433
Score = 125 bits (313), Expect = 8e-28
Identities = 57/78 (73%), Positives = 65/78 (83%)
Frame = -3
Query: 746 FNLGNPGEFTMLELAKVVQETIDPDAKIEYRPNTEDDPHKRKPDIDRAKELLGWEPKLDL 567
FNLGNPGEFTMLELA+VV+E IDP A IE++PNT DDPHKRKPDI +AKE L WEPK+ L
Sbjct: 350 FNLGNPGEFTMLELAEVVKEVIDPSATIEFKPNTADDPHKRKPDISKAKEQLNWEPKISL 409
Query: 566 HKGLPLMVSDFRQRIFGD 513
+GLP MVSDFR RI +
Sbjct: 410 REGLPRMVSDFRNRILNE 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,231,166
Number of Sequences: 1393205
Number of extensions: 14895620
Number of successful extensions: 37509
Number of sequences better than 10.0: 249
Number of HSP's better than 10.0 without gapping: 36042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37441
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
