Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002684A_C01 KMC002684A_c01
(331 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06533 probable gibberellin 20-oxidase - garden pea gi|1381... 43 4e-05
pir||T09106 gibberellin 20-oxidase (EC 1.14.11.-) - spinach gi|1... 44 5e-04
pir||T06990 gibberellin 20-dioxygenase (EC 1.14.11.-) (clone S39... 42 0.002
pir||T06991 gibberellin 20-dioxygenase (EC 1.14.11.-) (clone S37... 42 0.002
pir||T06330 gibberellin 20-dioxygenase (EC 1.14.11.-) [similarit... 42 0.002
>pir||T06533 probable gibberellin 20-oxidase - garden pea
gi|1381673|gb|AAB67838.1| gibberellin 20-oxidase [Pisum
sativum]
Length = 379
Score = 42.7 bits (99), Expect(2) = 4e-05
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -1
Query: 259 SLLEFTQKHYRADEATLPNFTKWL 188
SLLEFTQKHYRADE TL F+ WL
Sbjct: 350 SLLEFTQKHYRADERTLDAFSMWL 373
Score = 24.3 bits (51), Expect(2) = 4e-05
Identities = 7/16 (43%), Positives = 12/16 (74%)
Frame = -2
Query: 321 PPXEIVHKDGKKQYPN 274
PP E++ K+ ++YPN
Sbjct: 330 PPKELIDKENPRKYPN 345
>pir||T09106 gibberellin 20-oxidase (EC 1.14.11.-) - spinach
gi|1144390|gb|AAC49211.1| gibberellin 20-oxidase
gi|1589013|prf||2209435A gibberellin 20-oxidase
Length = 374
Score = 43.9 bits (102), Expect = 5e-04
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1
Query: 256 LLEFTQKHYRADEATLPNFTKWL 188
LLEFTQKHYRAD TL +FTKWL
Sbjct: 341 LLEFTQKHYRADTKTLDSFTKWL 363
>pir||T06990 gibberellin 20-dioxygenase (EC 1.14.11.-) (clone S39A) [similarity]
- wheat gi|2222798|emb|CAA74331.1| gibberellin
20-oxidase [Triticum aestivum]
Length = 365
Score = 42.0 bits (97), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -1
Query: 262 RSLLEFTQKHYRADEATLPNFTKWLISSE 176
RSLL+FTQKHYRAD TL F+ W++ +
Sbjct: 326 RSLLDFTQKHYRADMKTLEVFSSWIVQQQ 354
>pir||T06991 gibberellin 20-dioxygenase (EC 1.14.11.-) (clone S37E) [similarity]
- wheat gi|2222800|emb|CAA74332.1| gibberellin
20-oxidase [Triticum aestivum]
Length = 365
Score = 42.0 bits (97), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -1
Query: 262 RSLLEFTQKHYRADEATLPNFTKWLISSE 176
RSLL+FTQKHYRAD TL F+ W++ +
Sbjct: 326 RSLLDFTQKHYRADMKTLEVFSSWIVQQQ 354
>pir||T06330 gibberellin 20-dioxygenase (EC 1.14.11.-) [similarity] - wheat
gi|2222796|emb|CAA74330.1| gibberellin 20-oxidase
[Triticum aestivum] gi|2257603|dbj|BAA21480.1| wga20
[Triticum aestivum]
Length = 361
Score = 42.0 bits (97), Expect = 0.002
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -1
Query: 262 RSLLEFTQKHYRADEATLPNFTKWLISSE 176
RSLL+FTQKHYRAD TL F+ W++ +
Sbjct: 326 RSLLDFTQKHYRADMKTLEVFSSWIVQQQ 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 269,161,441
Number of Sequences: 1393205
Number of extensions: 5062748
Number of successful extensions: 10127
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 9842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10125
length of database: 448,689,247
effective HSP length: 85
effective length of database: 330,266,822
effective search space used: 7926403728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
