Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002683A_C02 KMC002683A_c02
(1088 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98176.1| RAB8E [Lotus japonicus] 414 e-114
dbj|BAB84323.1| ras-related protein RAB8-2 [Nicotiana tabacum] g... 379 e-104
emb|CAA98175.1| RAB8D [Lotus japonicus] 379 e-104
pir||S33900 GTP-binding protein ypt2 - tomato gi|313029|emb|CAA4... 376 e-103
pir||S57471 GTP-binding protein GTP6 - garden pea gi|871510|emb|... 375 e-103
>emb|CAA98176.1| RAB8E [Lotus japonicus]
Length = 215
Score = 414 bits (1064), Expect = e-114
Identities = 209/210 (99%), Positives = 209/210 (99%)
Frame = -2
Query: 925 MAAPPARARADYDYLIKLLLXGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 746
MAAPPARARADYDYLIKLLL GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
Query: 745 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN 566
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN
Sbjct: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN 120
Query: 565 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 386
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
Query: 385 LADTDSSKTEPTGIKINPQDKGSAGEAAQK 296
LADTDSSKTEPTGIKINPQDKGSAGEAAQK
Sbjct: 181 LADTDSSKTEPTGIKINPQDKGSAGEAAQK 210
>dbj|BAB84323.1| ras-related protein RAB8-2 [Nicotiana tabacum]
gi|18447919|dbj|BAB84325.1| ras-related protein RAB8-4
[Nicotiana tabacum]
Length = 216
Score = 379 bits (974), Expect = e-104
Identities = 194/213 (91%), Positives = 204/213 (95%), Gaps = 1/213 (0%)
Frame = -2
Query: 925 MAAPPARARADYDYLIKLLLXGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 746
MAAPPARARADYDYLIKLLL GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
Query: 745 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN 566
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWI NIEQHASDN
Sbjct: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
Query: 565 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 386
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 180
Query: 385 LADTDSSKTEPTGIKINPQDK-GSAGEAAQKCS 290
L+++D SKTEP I+IN D+ G++G+AAQK S
Sbjct: 181 LSESD-SKTEPQAIRINQSDQAGTSGQAAQKSS 212
>emb|CAA98175.1| RAB8D [Lotus japonicus]
Length = 214
Score = 379 bits (974), Expect = e-104
Identities = 193/212 (91%), Positives = 198/212 (93%)
Frame = -2
Query: 925 MAAPPARARADYDYLIKLLLXGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 746
MAAPPARARADYDYLIKLLL GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
Query: 745 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN 566
GKR+KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NW+ NIEQHASDN
Sbjct: 61 GKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWLRNIEQHASDN 120
Query: 565 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 386
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
Query: 385 LADTDSSKTEPTGIKINPQDKGSAGEAAQKCS 290
LADTD K EPT +KIN AGEAA K S
Sbjct: 181 LADTD-HKAEPTTLKINQDSAAGAGEAANKSS 211
>pir||S33900 GTP-binding protein ypt2 - tomato gi|313029|emb|CAA49600.1|
GTP-binding protein [Lycopersicon esculentum]
Length = 216
Score = 376 bits (965), Expect = e-103
Identities = 192/213 (90%), Positives = 202/213 (94%), Gaps = 1/213 (0%)
Frame = -2
Query: 925 MAAPPARARADYDYLIKLLLXGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 746
MAAPPARARADYDYLIKLLL GD+GVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1 MAAPPARARADYDYLIKLLLIGDTGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
Query: 745 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN 566
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWI NIEQHASDN
Sbjct: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
Query: 565 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 386
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSI +DIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIGKDIKQR 180
Query: 385 LADTDSSKTEPTGIKINPQDK-GSAGEAAQKCS 290
L+++D SKTEP I+IN D+ G+AG+ AQK S
Sbjct: 181 LSESD-SKTEPQSIRINQSDQAGTAGQGAQKSS 212
>pir||S57471 GTP-binding protein GTP6 - garden pea gi|871510|emb|CAA90080.1|
small GTP-binding protein [Pisum sativum]
Length = 216
Score = 375 bits (963), Expect = e-103
Identities = 192/211 (90%), Positives = 201/211 (94%), Gaps = 1/211 (0%)
Frame = -2
Query: 925 MAAPPARARADYDYLIKLLLXGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 746
MAAPPARAR+DYDYLIKLLL GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1 MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
Query: 745 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN 566
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWI NIEQHASDN
Sbjct: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120
Query: 565 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 386
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+EVFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQR 180
Query: 385 LADTDSSKTEPTGIKINPQDKGS-AGEAAQK 296
LA+TD SKTEP +KIN D+G+ + +A QK
Sbjct: 181 LAETD-SKTEPQTLKINQPDQGAGSAQATQK 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 895,008,796
Number of Sequences: 1393205
Number of extensions: 19549856
Number of successful extensions: 58730
Number of sequences better than 10.0: 2384
Number of HSP's better than 10.0 without gapping: 53906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56655
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 65065653414
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
