Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002682A_C01 KMC002682A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05882 hypothetical protein F6H11.10 - Arabidopsis thaliana... 57 3e-08
ref|NP_569021.1| expressed protein; protein id: At5g65910.1, sup... 57 3e-08
ref|NP_190549.1| putative protein; protein id: At3g49800.1, supp... 44 0.002
gb|AAK96895.1|AF247187_1 DSP-PP [Rattus norvegicus] 39 0.051
sp|Q62598|DSPP_RAT Dentin sialophosphoprotein precursor [Contain... 38 0.066
>pir||T05882 hypothetical protein F6H11.10 - Arabidopsis thaliana
gi|2827699|emb|CAA16672.1| predicted protein [Arabidopsis
thaliana]
Length = 1026
Score = 56.6 bits (135), Expect(2) = 3e-08
Identities = 35/65 (53%), Positives = 41/65 (62%), Gaps = 6/65 (9%)
Frame = -3
Query: 532 EDDNSEMVGPSGTSVHT--GNEEDVSFSDLEEDDS---DVQASYKK-TRSGSDSSTKDSR 371
E + +G T+ H +EEDVSFSDLEE+D DV+ SYK T SGSDSS K S
Sbjct: 944 ETSSVSAIGGRSTTNHPFGEDEEDVSFSDLEEEDDNEGDVKVSYKNLTNSGSDSSDKKSP 1003
Query: 370 DWVQL 356
DWVQL
Sbjct: 1004 DWVQL 1008
Score = 22.3 bits (46), Expect(2) = 3e-08
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 288 IQVLAIL*PRTSNDWLNVDDI 226
+Q+ + + SNDWL+VD +
Sbjct: 1006 VQLKEVKEKKKSNDWLDVDAV 1026
>ref|NP_569021.1| expressed protein; protein id: At5g65910.1, supported by cDNA:
gi_14334479, supported by cDNA: gi_21281218 [Arabidopsis
thaliana] gi|9759575|dbj|BAB11138.1|
gene_id:K14B20.8~unknown protein [Arabidopsis thaliana]
gi|14334480|gb|AAK59438.1| unknown protein [Arabidopsis
thaliana] gi|21281219|gb|AAM44972.1| unknown protein
[Arabidopsis thaliana]
Length = 432
Score = 56.6 bits (135), Expect(2) = 3e-08
Identities = 35/65 (53%), Positives = 41/65 (62%), Gaps = 6/65 (9%)
Frame = -3
Query: 532 EDDNSEMVGPSGTSVHT--GNEEDVSFSDLEEDDS---DVQASYKK-TRSGSDSSTKDSR 371
E + +G T+ H +EEDVSFSDLEE+D DV+ SYK T SGSDSS K S
Sbjct: 350 ETSSVSAIGGRSTTNHPFGEDEEDVSFSDLEEEDDNEGDVKVSYKNLTNSGSDSSDKKSP 409
Query: 370 DWVQL 356
DWVQL
Sbjct: 410 DWVQL 414
Score = 22.3 bits (46), Expect(2) = 3e-08
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 288 IQVLAIL*PRTSNDWLNVDDI 226
+Q+ + + SNDWL+VD +
Sbjct: 412 VQLKEVKEKKKSNDWLDVDAV 432
>ref|NP_190549.1| putative protein; protein id: At3g49800.1, supported by cDNA:
gi_15983353, supported by cDNA: gi_17380635 [Arabidopsis
thaliana] gi|11358044|pir||T46046 hypothetical protein
T16K5.150 - Arabidopsis thaliana
gi|6723425|emb|CAB66918.1| putative protein [Arabidopsis
thaliana] gi|15983354|gb|AAL11545.1|AF424551_1
AT3g49800/T16K5_150 [Arabidopsis thaliana]
gi|17380636|gb|AAL36081.1| AT3g49800/T16K5_150
[Arabidopsis thaliana]
Length = 428
Score = 43.5 bits (101), Expect = 0.002
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = -3
Query: 532 EDDNSEMVGPSGTSVHTGNEEDVSFSDLEEDDSDVQASYKK 410
++DN+ V + + +EDVSFSDLEEDD DV SYKK
Sbjct: 388 DEDNAGTVSATTNHLVQDVDEDVSFSDLEEDDDDVPVSYKK 428
>gb|AAK96895.1|AF247187_1 DSP-PP [Rattus norvegicus]
Length = 618
Score = 38.5 bits (88), Expect = 0.051
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = -3
Query: 532 EDDNSEMVGPSGTSVHTGNEE----DVSFSDLEEDDSDVQASYKKTRSGSDSSTKDSRDW 365
EDD+S+ + S G+++ D SD D+D + K S SDS + DS D
Sbjct: 499 EDDSSDDTSDTDDSDSNGDDDSESKDKDESDNSNHDNDSDSESKSDSSDSDSDSSDSSDS 558
Query: 364 VQLGRSSPNSDKDITSVEGRHAGSDHS 284
SS +SD + + + + SD S
Sbjct: 559 SDSSDSSESSDSSDSDSDSKDSTSDSS 585
Score = 31.2 bits (69), Expect = 8.1
Identities = 25/85 (29%), Positives = 36/85 (41%), Gaps = 3/85 (3%)
Frame = -3
Query: 502 SGTSVHTGNEEDVSFSDLEEDDSDVQA---SYKKTRSGSDSSTKDSRDWVQLGRSSPNSD 332
S + H G E+D S + DDSD S K + SD+S D+ + S +SD
Sbjct: 491 SDSDSHAG-EDDSSDDTSDTDDSDSNGDDDSESKDKDESDNSNHDNDSDSESKSDSSDSD 549
Query: 331 KDITSVEGRHAGSDHSSARNSVTQD 257
D + SD S + +S D
Sbjct: 550 SDSSDSSDSSDSSDSSESSDSSDSD 574
>sp|Q62598|DSPP_RAT Dentin sialophosphoprotein precursor [Contains: Dentin
phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
sialoprotein (DSP)]
Length = 687
Score = 38.1 bits (87), Expect = 0.066
Identities = 29/93 (31%), Positives = 40/93 (42%), Gaps = 5/93 (5%)
Frame = -3
Query: 532 EDDNSEMVGPSGTSVHTGNEE----DVSFSDLEEDDSDVQASYKKTRSGSDSSTKDSRDW 365
EDD+S+ + S G+++ D SD D+D + K S SDS + DS D
Sbjct: 499 EDDSSDDTSDTDDSDSNGDDDSESKDKDESDNSNHDNDSDSESKSDSSDSDSDSSDSSDS 558
Query: 364 VQLGRSSPNSD-KDITSVEGRHAGSDHSSARNS 269
SS SD D + SD S + NS
Sbjct: 559 SDSSDSSETSDSSDSSDTSDSSDSSDSSDSSNS 591
Score = 33.5 bits (75), Expect = 1.6
Identities = 28/90 (31%), Positives = 41/90 (45%)
Frame = -3
Query: 526 DNSEMVGPSGTSVHTGNEEDVSFSDLEEDDSDVQASYKKTRSGSDSSTKDSRDWVQLGRS 347
D+S+ S TS + + D SD + DSD +S + + SDS + DS D S
Sbjct: 584 DSSDSSNSSDTS-DSSDSSDGDSSDGDSSDSD--SSDSDSSNSSDSDSSDSSD----SSS 636
Query: 346 SPNSDKDITSVEGRHAGSDHSSARNSVTQD 257
S +SD D S + SD +S + D
Sbjct: 637 SDSSDSDSDSKDSTSDSSDDNSKSGNGNSD 666
Score = 32.7 bits (73), Expect = 2.8
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -3
Query: 526 DNSEMVGPSGTSVHTGNEEDVSFSDLEEDDSDVQASYKKTRSGSDSSTKDSR-----DWV 362
D+S+ G S + + + S + + D SD S S SDS +KDS D
Sbjct: 599 DSSDGDSSDGDSSDSDSSDSDSSNSSDSDSSDSSDSSSSDSSDSDSDSKDSTSDSSDDNS 658
Query: 361 QLGRSSPNSDKDITSVEGRHAGSDHSSA 278
+ G + +SD D S + + S+HS++
Sbjct: 659 KSGNGNSDSDSDSDS-DSEGSDSNHSTS 685
Score = 31.6 bits (70), Expect = 6.2
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -3
Query: 532 EDDNSEMVGPSGTSVHTGNEEDVSFSDLEEDDSDVQASYKKTRSGSDSSTKDSRDWVQLG 353
+ D+S+ + + + + D S SD + DSD + S SDSS +S+
Sbjct: 612 DSDSSDSDSSNSSDSDSSDSSDSSSSDSSDSDSDSKDST------SDSSDDNSKSGNGNS 665
Query: 352 RSSPNSDKDITSVEGRHAGSD 290
S +SD D + H+ SD
Sbjct: 666 DSDSDSDSDSEGSDSNHSTSD 686
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,211,854
Number of Sequences: 1393205
Number of extensions: 8904250
Number of successful extensions: 29218
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 24437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27032
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
