Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002680A_C01 KMC002680A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171919.2| unknown protein; protein id: At1g04230.1, suppo... 80 2e-14
gb|AAK43860.1|AF370483_1 Unknown protein [Arabidopsis thaliana] 80 2e-14
gb|AAM61250.1| unknown [Arabidopsis thaliana] 79 5e-14
ref|NP_568627.1| expressed protein; protein id: At5g43720.1, sup... 79 5e-14
dbj|BAB11299.1| gene_id:MQD19.5~unknown protein [Arabidopsis tha... 79 5e-14
>ref|NP_171919.2| unknown protein; protein id: At1g04230.1, supported by cDNA:
gi_13877564 [Arabidopsis thaliana]
Length = 278
Score = 79.7 bits (195), Expect = 2e-14
Identities = 47/81 (58%), Positives = 54/81 (66%)
Frame = -1
Query: 546 RALMPPPRPSHKLSRFGSSSGPNSSIRRPENSTSRNTSNSRSSSDFKARGPSRSVTGHGS 367
R LMPPPR SRF S+S SS++R E +S NTS+ RS S A + S T S
Sbjct: 203 RVLMPPPR-----SRFASTSRQYSSVKRNEIPSSSNTSHRRSQSSHAA---TSSHTSQSS 254
Query: 366 SLSSNSDAHKPKRKRRPKKKK 304
+LSSNSDAHKPKRKRRPKKKK
Sbjct: 255 NLSSNSDAHKPKRKRRPKKKK 275
>gb|AAK43860.1|AF370483_1 Unknown protein [Arabidopsis thaliana]
Length = 325
Score = 79.7 bits (195), Expect = 2e-14
Identities = 47/81 (58%), Positives = 54/81 (66%)
Frame = -1
Query: 546 RALMPPPRPSHKLSRFGSSSGPNSSIRRPENSTSRNTSNSRSSSDFKARGPSRSVTGHGS 367
R LMPPPR SRF S+S SS++R E +S NTS+ RS S A + S T S
Sbjct: 250 RVLMPPPR-----SRFASTSRQYSSVKRNEIPSSSNTSHRRSQSSHAA---TSSHTSQSS 301
Query: 366 SLSSNSDAHKPKRKRRPKKKK 304
+LSSNSDAHKPKRKRRPKKKK
Sbjct: 302 NLSSNSDAHKPKRKRRPKKKK 322
>gb|AAM61250.1| unknown [Arabidopsis thaliana]
Length = 328
Score = 78.6 bits (192), Expect = 5e-14
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Frame = -1
Query: 546 RALMPPPRPSHKLSRFGSSSGPNSSIRRPE--NSTSRNTSNSRSSSDFKARGPSRSVTGH 373
RALMPPP+ +RF S+S N ++R E +S+ NTSN RS S + + S +
Sbjct: 249 RALMPPPQ-----ARFESNSRKNLYVQRNEMPSSSRNNTSNRRSESSYTRASAANSYSSQ 303
Query: 372 GSSLSSNSDAHKPKRKRRPKKKK 304
S+LSSNSDAHKPKRKRRPKKKK
Sbjct: 304 SSNLSSNSDAHKPKRKRRPKKKK 326
>ref|NP_568627.1| expressed protein; protein id: At5g43720.1, supported by cDNA:
115009. [Arabidopsis thaliana]
Length = 329
Score = 78.6 bits (192), Expect = 5e-14
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Frame = -1
Query: 546 RALMPPPRPSHKLSRFGSSSGPNSSIRRPE--NSTSRNTSNSRSSSDFKARGPS-RSVTG 376
RALMPPP+ +RF S+S N ++R E +S+ NTSN RS S + AR + S +
Sbjct: 249 RALMPPPQ-----ARFESNSRKNLYVQRNEMPSSSRNNTSNRRSESSYNARASAANSYSS 303
Query: 375 HGSSLSSNSDAHKPKRKRRPKKKK 304
S+LSSNSDAHKPKRKRRPKKKK
Sbjct: 304 QSSNLSSNSDAHKPKRKRRPKKKK 327
>dbj|BAB11299.1| gene_id:MQD19.5~unknown protein [Arabidopsis thaliana]
Length = 345
Score = 78.6 bits (192), Expect = 5e-14
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
Frame = -1
Query: 546 RALMPPPRPSHKLSRFGSSSGPNSSIRRPE--NSTSRNTSNSRSSSDFKARGPS-RSVTG 376
RALMPPP+ +RF S+S N ++R E +S+ NTSN RS S + AR + S +
Sbjct: 249 RALMPPPQ-----ARFESNSRKNLYVQRNEMPSSSRNNTSNRRSESSYNARASAANSYSS 303
Query: 375 HGSSLSSNSDAHKPKRKRRPKKKK 304
S+LSSNSDAHKPKRKRRPKKKK
Sbjct: 304 QSSNLSSNSDAHKPKRKRRPKKKK 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,498,185
Number of Sequences: 1393205
Number of extensions: 9527660
Number of successful extensions: 36764
Number of sequences better than 10.0: 398
Number of HSP's better than 10.0 without gapping: 28536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34132
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
