Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002679A_C01 KMC002679A_c01
(448 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187788.1| syntaxin SYP121; protein id: At3g11820.1, suppo... 142 6e-52
ref|NP_176324.1| syntaxin SYP124; protein id: At1g61290.1 [Arabi... 136 7e-44
ref|NP_190808.1| syntaxin SYP122; protein id: At3g52400.1, suppo... 134 2e-31
gb|AAD11808.1| syntaxin-related protein Nt-syr1 [Nicotiana tabacum] 133 6e-31
pir||T48847 syntaxin synt4 [imported] - Arabidopsis thaliana gi|... 132 7e-31
>ref|NP_187788.1| syntaxin SYP121; protein id: At3g11820.1, supported by cDNA:
38899., supported by cDNA: gi_20260503, supported by
cDNA: gi_4206788 [Arabidopsis thaliana]
gi|28380149|sp|Q9ZSD4|S121_ARATH Syntaxin 121 (AtSYP121)
(Syntaxin-related protein At-Syr1)
gi|4206789|gb|AAD11809.1| syntaxin-related protein
At-SYR1 [Arabidopsis thaliana]
gi|6671938|gb|AAF23198.1|AC016795_11 putative syntaxin
[Arabidopsis thaliana] gi|20260504|gb|AAM13150.1|
putative syntaxin [Arabidopsis thaliana]
gi|21593428|gb|AAM65395.1| putative syntaxin
[Arabidopsis thaliana] gi|28059412|gb|AAO30056.1|
putative syntaxin [Arabidopsis thaliana]
Length = 346
Score = 142 bits (358), Expect(2) = 6e-52
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +3
Query: 192 ISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLMQLHQVFLDMTVLVQYQ 371
ISTGESE FLQKAIQEQGRGR+LDTINEIQERHDAVK+IEKNL +LHQVFLDM VLV++Q
Sbjct: 189 ISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQ 248
Query: 372 GEQLDNIESHVNRASSFVHTGTEQL 446
G QLD+IESHV RASSF+ GT+QL
Sbjct: 249 GAQLDDIESHVGRASSFIRGGTDQL 273
Score = 82.0 bits (201), Expect(2) = 6e-52
Identities = 44/67 (65%), Positives = 50/67 (73%), Gaps = 3/67 (4%)
Frame = +1
Query: 4 GTGPLRTGPGTPWSTV---KKKLKDSMDVFNRLREVISSEYRDTVQRRYFTVTGENPDEK 174
G GP + T S + +KKL DSMD FNRLRE+ISSEYR+TVQRRYFTVTGENPDE+
Sbjct: 124 GCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDER 183
Query: 175 TLASLAS 195
TL L S
Sbjct: 184 TLDRLIS 190
>ref|NP_176324.1| syntaxin SYP124; protein id: At1g61290.1 [Arabidopsis thaliana]
gi|28380117|sp|O64791|S124_ARATH Putative syntaxin 124
(AtSYP124) gi|25404877|pir||G96638 protein T1F9.22
[imported] - Arabidopsis thaliana
gi|3056601|gb|AAC13912.1|AAC13912 T1F9.22 [Arabidopsis
thaliana]
Length = 303
Score = 136 bits (342), Expect(2) = 7e-44
Identities = 67/85 (78%), Positives = 79/85 (92%)
Frame = +3
Query: 192 ISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLMQLHQVFLDMTVLVQYQ 371
IS+GESE FLQKAIQEQGRG+ILDTI+EIQERHDAVKEIEKNL++LHQVFLDM LV+ Q
Sbjct: 178 ISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQ 237
Query: 372 GEQLDNIESHVNRASSFVHTGTEQL 446
G+QL++IESHV++ASSFV GT+QL
Sbjct: 238 GQQLNDIESHVSKASSFVRRGTDQL 262
Score = 61.2 bits (147), Expect(2) = 7e-44
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Frame = +1
Query: 4 GTGPLRTGPGTPWSTVK---KKLKDSMDVFNRLREVISSEYRDTVQRRYFTVTGENPDEK 174
G GP + T S V KKLKD MD F LR +++EY++TV+RRYFT+TGE DE+
Sbjct: 113 GCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQ 172
Query: 175 TLASLAS 195
T+ +L S
Sbjct: 173 TIENLIS 179
>ref|NP_190808.1| syntaxin SYP122; protein id: At3g52400.1, supported by cDNA:
37248., supported by cDNA: gi_15292946, supported by
cDNA: gi_20259662 [Arabidopsis thaliana]
gi|28380140|sp|Q9SVC2|S122_ARATH Syntaxin 122 (AtSYP122)
(Synt4) gi|7486007|pir||T08459 hypothetical protein
F22O6.220 - Arabidopsis thaliana
gi|4886287|emb|CAB43444.1| syntaxin-like protein synt4
[Arabidopsis thaliana] gi|15292947|gb|AAK93584.1|
putative syntaxin protein synt4 [Arabidopsis thaliana]
gi|20259663|gb|AAM14349.1| putative syntaxin synt4
protein [Arabidopsis thaliana]
gi|24417512|gb|AAN60366.1| unknown [Arabidopsis
thaliana]
Length = 341
Score = 134 bits (338), Expect = 2e-31
Identities = 83/153 (54%), Positives = 101/153 (65%), Gaps = 5/153 (3%)
Frame = +3
Query: 3 GYGPPSDRTRNSVVNG-----EEEVEGLHGCFQPPP*SYLFGV*GYRSTPLLHRHRRES* 167
G G SDR R SVVNG ++E+E + Y V G + + E+
Sbjct: 125 GPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETV-GRMCFTVTGEYPDEA- 182
Query: 168 *KNACIACISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLMQLHQVFLD 347
ISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVK+IEK+L +LHQVFLD
Sbjct: 183 ---TLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLD 239
Query: 348 MTVLVQYQGEQLDNIESHVNRASSFVHTGTEQL 446
M VLV++QG QLD+IE +V RA+S V +G ++L
Sbjct: 240 MAVLVEHQGAQLDDIEGNVKRANSLVRSGADRL 272
Score = 61.2 bits (147), Expect = 3e-09
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +1
Query: 49 VKKKLKDSMDVFNRLREVISSEYRDTVQRRYFTVTGENPDEKTLASLAS 195
++KKLKD M+ F+R+RE I++EY++TV R FTVTGE PDE TL L S
Sbjct: 141 LRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLIS 189
>gb|AAD11808.1| syntaxin-related protein Nt-syr1 [Nicotiana tabacum]
Length = 300
Score = 133 bits (334), Expect = 6e-31
Identities = 80/153 (52%), Positives = 99/153 (64%), Gaps = 5/153 (3%)
Frame = +3
Query: 3 GYGPPSDRTRNSVVNG-----EEEVEGLHGCFQPPP*SYLFGV*GYRSTPLLHRHRRES* 167
G G SDRTR SVVNG +E + + Q Y V + E+
Sbjct: 116 GPGSSSDRTRTSVVNGLRKKLQESMNQFNELRQKMASEYRETV-----QRRYYTVTGENP 170
Query: 168 *KNACIACISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLMQLHQVFLD 347
+ ISTG+SETFLQKAIQEQGRG+++DT+ EIQERH+AVKE+E+NL +LHQVFLD
Sbjct: 171 DEAVLDTLISTGQSETFLQKAIQEQGRGQVMDTVMEIQERHEAVKELERNLKELHQVFLD 230
Query: 348 MTVLVQYQGEQLDNIESHVNRASSFVHTGTEQL 446
M VLV+ QG QLD+IES VNRA+SFV G +QL
Sbjct: 231 MAVLVESQGAQLDDIESQVNRANSFVRGGAQQL 263
Score = 70.5 bits (171), Expect = 4e-12
Identities = 37/67 (55%), Positives = 48/67 (71%), Gaps = 3/67 (4%)
Frame = +1
Query: 4 GTGPLRTGPGTPWSTV---KKKLKDSMDVFNRLREVISSEYRDTVQRRYFTVTGENPDEK 174
G GP + T S V +KKL++SM+ FN LR+ ++SEYR+TVQRRY+TVTGENPDE
Sbjct: 114 GCGPGSSSDRTRTSVVNGLRKKLQESMNQFNELRQKMASEYRETVQRRYYTVTGENPDEA 173
Query: 175 TLASLAS 195
L +L S
Sbjct: 174 VLDTLIS 180
>pir||T48847 syntaxin synt4 [imported] - Arabidopsis thaliana
gi|5701797|emb|CAB52174.1| syntaxin protein [Arabidopsis
thaliana] gi|21593223|gb|AAM65172.1| syntaxin-like
protein synt4 [Arabidopsis thaliana]
Length = 341
Score = 132 bits (333), Expect = 7e-31
Identities = 82/153 (53%), Positives = 101/153 (65%), Gaps = 5/153 (3%)
Frame = +3
Query: 3 GYGPPSDRTRNSVVNG-----EEEVEGLHGCFQPPP*SYLFGV*GYRSTPLLHRHRRES* 167
G G SDR R SVVNG ++E+E + Y V G + + E+
Sbjct: 125 GPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETV-GRMCFTVTGEYPDEA- 182
Query: 168 *KNACIACISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLMQLHQVFLD 347
ISTGESETFLQKAIQEQGRGRILDTI+EIQERHDAVK+IEK+L +LHQVFLD
Sbjct: 183 ---TLERLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDIEKSLNELHQVFLD 239
Query: 348 MTVLVQYQGEQLDNIESHVNRASSFVHTGTEQL 446
M VLV++QG QLD+IE +V RA+S V +G ++L
Sbjct: 240 MAVLVEHQGAQLDDIEGNVKRANSLVRSGADRL 272
Score = 61.2 bits (147), Expect = 3e-09
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +1
Query: 49 VKKKLKDSMDVFNRLREVISSEYRDTVQRRYFTVTGENPDEKTLASLAS 195
++KKLKD M+ F+R+RE I++EY++TV R FTVTGE PDE TL L S
Sbjct: 141 LRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLIS 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,094,038
Number of Sequences: 1393205
Number of extensions: 7920003
Number of successful extensions: 25376
Number of sequences better than 10.0: 193
Number of HSP's better than 10.0 without gapping: 24612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25372
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 6622363848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
