Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002677A_C01 KMC002677A_c01
(442 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD30679.1| DEK protein [Drosophila melanogaster] 33 0.80
ref|NP_725622.2| CG5935-PA [Drosophila melanogaster] gi|28380772... 33 0.80
ref|NP_652058.1| CG5935-PB [Drosophila melanogaster] gi|17862130... 33 0.80
pir||T13691 hypothetical protein EG0003.6 - fruit fly (Drosophil... 33 0.80
ref|NP_725621.1| CG5935-PC [Drosophila melanogaster] gi|21645255... 33 0.80
>emb|CAD30679.1| DEK protein [Drosophila melanogaster]
Length = 612
Score = 33.1 bits (74), Expect = 0.80
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 413 GDKDEDED--QHPLNSAEDPPRIKQDEEAKSGNSSRGTG 303
GD++E+ED L+ E+ P ++D++ KSG SS G G
Sbjct: 328 GDEEEEEDAEDEDLDEDEEDPPSEEDKKRKSGKSSGGAG 366
>ref|NP_725622.2| CG5935-PA [Drosophila melanogaster] gi|28380772|gb|AAF57943.2|
CG5935-PA [Drosophila melanogaster]
Length = 663
Score = 33.1 bits (74), Expect = 0.80
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 413 GDKDEDED--QHPLNSAEDPPRIKQDEEAKSGNSSRGTG 303
GD++E+ED L+ E+ P ++D++ KSG SS G G
Sbjct: 328 GDEEEEEDAEDEDLDEDEEDPPSEEDKKRKSGKSSGGAG 366
>ref|NP_652058.1| CG5935-PB [Drosophila melanogaster] gi|17862130|gb|AAL39542.1|
LD10094p [Drosophila melanogaster]
gi|21645256|gb|AAM70892.1| CG5935-PB [Drosophila
melanogaster]
Length = 669
Score = 33.1 bits (74), Expect = 0.80
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 413 GDKDEDED--QHPLNSAEDPPRIKQDEEAKSGNSSRGTG 303
GD++E+ED L+ E+ P ++D++ KSG SS G G
Sbjct: 334 GDEEEEEDAEDEDLDEDEEDPPSEEDKKRKSGKSSGGAG 372
>pir||T13691 hypothetical protein EG0003.6 - fruit fly (Drosophila melanogaster)
gi|3929698|emb|CAA21319.1| 1-evidence=predicted by
content~1-method=genefinder;084~1-method_score=68.61~1-
evidence_end~2-evidence=predicted by
match~2-match_accession=AA541052~2-
match_description=LD20837.5prime LD Drosophila
melanogaster embryo BlueScript Drosophila melanogaster
cDNA clone LD20837 5prime.~2-match_species=Drosophila
melanogaster (fruit
fly)~2-method=blastn;1.4.9~2-method_score=815.00~2-
evidence_end~3-evidence=predicted by
match~3-match_accession=AA950020~3-
match_description=LD29961.5prime LD Drosophila
melanogaster >
Length = 638
Score = 33.1 bits (74), Expect = 0.80
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 413 GDKDEDED--QHPLNSAEDPPRIKQDEEAKSGNSSRGTG 303
GD++E+ED L+ E+ P ++D++ KSG SS G G
Sbjct: 332 GDEEEEEDAEDEDLDEDEEDPPSEEDKKRKSGKSSGGAG 370
>ref|NP_725621.1| CG5935-PC [Drosophila melanogaster] gi|21645255|gb|AAM70891.1|
CG5935-PC [Drosophila melanogaster]
Length = 667
Score = 33.1 bits (74), Expect = 0.80
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 413 GDKDEDED--QHPLNSAEDPPRIKQDEEAKSGNSSRGTG 303
GD++E+ED L+ E+ P ++D++ KSG SS G G
Sbjct: 332 GDEEEEEDAEDEDLDEDEEDPPSEEDKKRKSGKSSGGAG 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,136,772
Number of Sequences: 1393205
Number of extensions: 6806367
Number of successful extensions: 17279
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17171
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
