Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002674A_C01 KMC002674A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199627.1| putative protein; protein id: At5g48160.1 [Arab... 125 5e-28
ref|NP_566320.1| expressed protein; protein id: At3g07780.1, sup... 96 5e-19
pir||A56235 transcription activator MafB - chicken gi|516724|dbj... 39 0.047
gb|EAA30441.1| predicted protein [Neurospora crassa] 32 0.084
emb|CAA65360.1| MAFB protein [Coturnix japonica] 38 0.14
>ref|NP_199627.1| putative protein; protein id: At5g48160.1 [Arabidopsis thaliana]
gi|8777406|dbj|BAA96996.1|
gb|AAF13095.1~gene_id:MIF21.5~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 574
Score = 125 bits (314), Expect = 5e-28
Identities = 66/99 (66%), Positives = 77/99 (77%), Gaps = 2/99 (2%)
Frame = -3
Query: 656 RLQRIAFAKPDKSEEEFTSHYL*LRLNEAEAEKQYLYEKIKLQESSRVSHSGGGGGGSSG 477
RLQRI AK DKSEEE+ S+YL RL+EAEAEKQYL+EKIKLQE+SRV+ GG G
Sbjct: 480 RLQRIVLAKMDKSEEEYASNYLKQRLSEAEAEKQYLFEKIKLQENSRVASQSSGG----G 535
Query: 476 GDPSQILMYSKIHDLL--YNVPPKADSQANLRHPFRTNP 366
GDPSQ++MYSKI DLL YN+ PK D Q N R+PFR+NP
Sbjct: 536 GDPSQVMMYSKIRDLLQGYNLSPKVDPQLNERNPFRSNP 574
>ref|NP_566320.1| expressed protein; protein id: At3g07780.1, supported by cDNA:
gi_15028084, supported by cDNA: gi_21280842 [Arabidopsis
thaliana] gi|6466960|gb|AAF13095.1|AC009176_22 unknown
protein [Arabidopsis thaliana]
gi|6648190|gb|AAF21188.1|AC013483_12 unknown protein
[Arabidopsis thaliana] gi|15028085|gb|AAK76573.1|
unknown protein [Arabidopsis thaliana]
gi|21280843|gb|AAM44995.1| unknown protein [Arabidopsis
thaliana]
Length = 566
Score = 95.5 bits (236), Expect = 5e-19
Identities = 53/100 (53%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Frame = -3
Query: 656 RLQRIAFAKPDKSEEEFTSHYL*LRLNEAEAEKQYLYEKIKLQESSRVSHSGGGGGGSSG 477
RL+RI AK +K+EEE+ S+YL LRL+EAEAEK+YL+EKIK QES G +G
Sbjct: 478 RLERIVKAKKEKTEEEYASNYLKLRLSEAEAEKEYLFEKIKEQES-----------GGNG 526
Query: 476 GDPSQILMYSKIHDLL--YNV-PPKADSQANLRHPFRTNP 366
G+ SQ +MYSKI ++L YN P+ D ++N R+PFR+NP
Sbjct: 527 GEASQAVMYSKIREMLHGYNASSPRVDPRSNQRNPFRSNP 566
>pir||A56235 transcription activator MafB - chicken gi|516724|dbj|BAA05938.1|
MafB [Gallus gallus]
Length = 311
Score = 39.3 bits (90), Expect = 0.047
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 476 RRCYHHHHHHYVKHENSPAILFSHTDIASQPQPH 577
R +HHHHHH+ H PA+ +H D+A PH
Sbjct: 128 RAHHHHHHHHHQHHHQYPAV--THEDLAGSGHPH 159
>gb|EAA30441.1| predicted protein [Neurospora crassa]
Length = 803
Score = 31.6 bits (70), Expect(2) = 0.084
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = +2
Query: 485 YHHHHHHYVKHENSPAILFSHTDIASQPQPH 577
YHHHHHH+ H++ + D S PH
Sbjct: 236 YHHHHHHHGHHKDDHHHDYHDHDHDSSDDPH 266
Score = 25.8 bits (55), Expect(2) = 0.084
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 467 RDHRRCYHHHHHH 505
RDH +HHHHHH
Sbjct: 208 RDH---HHHHHHH 217
>emb|CAA65360.1| MAFB protein [Coturnix japonica]
Length = 311
Score = 37.7 bits (86), Expect = 0.14
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 476 RRCYHHHHHHYVKHENSPAILFSHTDIASQPQPH 577
R +HHHHHH H PA+ +H D+A PH
Sbjct: 128 RAHHHHHHHHQHHHHQYPAV--THEDLAGSGHPH 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,153,720
Number of Sequences: 1393205
Number of extensions: 12336879
Number of successful extensions: 115816
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 52390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93341
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
