Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002672A_C01 KMC002672A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC78480.1| putative aminotransferase [Capsicum chinense] 97 3e-35
emb|CAD12664.1| viroid RNA-binding protein [Lycopersicon esculen... 99 4e-35
ref|NP_566700.1| aminotransferase, putative; protein id: At3g222... 99 1e-33
gb|AAK52899.1|AF351125_1 gamma-aminobutyrate transaminase subuni... 99 1e-33
dbj|BAB03068.1| aminotransferase-like protein [Arabidopsis thali... 99 1e-32
>gb|AAC78480.1| putative aminotransferase [Capsicum chinense]
Length = 459
Score = 96.7 bits (239), Expect(2) = 3e-35
Identities = 45/58 (77%), Positives = 49/58 (83%)
Frame = +1
Query: 397 GRKYLDALAGLWSTALGGNEPRLVEAANAQLKKLPFYHSFWNRTTRPSLDLAKELL*M 570
G+KYLD L+GLW LGG+E RLVEAAN QL LPFYHSFWNRTT+PSLDLAKELL M
Sbjct: 43 GKKYLDTLSGLWCATLGGSETRLVEAANKQLNTLPFYHSFWNRTTKPSLDLAKELLNM 100
Score = 73.9 bits (180), Expect(2) = 3e-35
Identities = 31/38 (81%), Positives = 35/38 (91%)
Frame = +3
Query: 291 FKSHDMLAPFTAGWQTDLTPLIIEKSEGSYVYDVNGKK 404
F HDMLAPFTAGWQ+D+ PL+IEKSEGSYVYD+NGKK
Sbjct: 8 FMGHDMLAPFTAGWQSDMEPLVIEKSEGSYVYDINGKK 45
>emb|CAD12664.1| viroid RNA-binding protein [Lycopersicon esculentum]
Length = 476
Score = 98.6 bits (244), Expect(2) = 4e-35
Identities = 44/58 (75%), Positives = 52/58 (88%)
Frame = +1
Query: 397 GRKYLDALAGLWSTALGGNEPRLVEAANAQLKKLPFYHSFWNRTTRPSLDLAKELL*M 570
G+KYLD+L+GLW + LGG+EPRL+EAAN QL KL FYHSFWNRTT+PSLDLAKEL+ M
Sbjct: 52 GKKYLDSLSGLWCSVLGGSEPRLIEAANKQLNKLAFYHSFWNRTTKPSLDLAKELINM 109
Score = 71.2 bits (173), Expect(2) = 4e-35
Identities = 30/42 (71%), Positives = 35/42 (82%)
Frame = +3
Query: 279 KSEGFKSHDMLAPFTAGWQTDLTPLIIEKSEGSYVYDVNGKK 404
K+ GF HDMLAPFTA W D+ PL+I+K+EGSYVYDVNGKK
Sbjct: 13 KTNGFMGHDMLAPFTAAWMIDMGPLVIDKAEGSYVYDVNGKK 54
>ref|NP_566700.1| aminotransferase, putative; protein id: At3g22200.1, supported by
cDNA: gi_14030434, supported by cDNA: gi_14334463
[Arabidopsis thaliana] gi|14334464|gb|AAK59430.1|
putative aminotransferase [Arabidopsis thaliana]
gi|23296654|gb|AAN13140.1| putative aminotransferase
[Arabidopsis thaliana]
Length = 504
Score = 98.6 bits (244), Expect(2) = 1e-33
Identities = 47/58 (81%), Positives = 50/58 (86%)
Frame = +1
Query: 397 GRKYLDALAGLWSTALGGNEPRLVEAANAQLKKLPFYHSFWNRTTRPSLDLAKELL*M 570
G+KYLD+LAGLW TALGGNEPRLV AA QL LPFYHSFWNRTT+PSLDLAK LL M
Sbjct: 86 GKKYLDSLAGLWCTALGGNEPRLVSAAVEQLNTLPFYHSFWNRTTKPSLDLAKVLLEM 143
Score = 66.2 bits (160), Expect(2) = 1e-33
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 225 RSYSTESSLAKDDSTSGDKSEGFKSHDMLAPFTAGWQT-DLTPLIIEKSEGSYVYDVNGK 401
R ++TE++ K ++ G K HDMLAPFTAGWQ+ DL PL+I KSEGSYVYD GK
Sbjct: 34 RIFTTEAAPEKKNTV------GSKGHDMLAPFTAGWQSADLDPLVIAKSEGSYVYDDTGK 87
Query: 402 K 404
K
Sbjct: 88 K 88
>gb|AAK52899.1|AF351125_1 gamma-aminobutyrate transaminase subunit precursor [Arabidopsis
thaliana]
Length = 504
Score = 98.6 bits (244), Expect(2) = 1e-33
Identities = 47/58 (81%), Positives = 50/58 (86%)
Frame = +1
Query: 397 GRKYLDALAGLWSTALGGNEPRLVEAANAQLKKLPFYHSFWNRTTRPSLDLAKELL*M 570
G+KYLD+LAGLW TALGGNEPRLV AA QL LPFYHSFWNRTT+PSLDLAK LL M
Sbjct: 86 GKKYLDSLAGLWCTALGGNEPRLVSAAVEQLNTLPFYHSFWNRTTKPSLDLAKVLLEM 143
Score = 66.2 bits (160), Expect(2) = 1e-33
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 225 RSYSTESSLAKDDSTSGDKSEGFKSHDMLAPFTAGWQT-DLTPLIIEKSEGSYVYDVNGK 401
R ++TE++ K ++ G K HDMLAPFTAGWQ+ DL PL+I KSEGSYVYD GK
Sbjct: 34 RIFTTEAAPEKKNTV------GSKGHDMLAPFTAGWQSADLDPLVIAKSEGSYVYDDTGK 87
Query: 402 K 404
K
Sbjct: 88 K 88
>dbj|BAB03068.1| aminotransferase-like protein [Arabidopsis thaliana]
Length = 466
Score = 98.6 bits (244), Expect(2) = 1e-32
Identities = 47/58 (81%), Positives = 50/58 (86%)
Frame = +1
Query: 397 GRKYLDALAGLWSTALGGNEPRLVEAANAQLKKLPFYHSFWNRTTRPSLDLAKELL*M 570
G+KYLD+LAGLW TALGGNEPRLV AA QL LPFYHSFWNRTT+PSLDLAK LL M
Sbjct: 48 GKKYLDSLAGLWCTALGGNEPRLVSAAVEQLNTLPFYHSFWNRTTKPSLDLAKVLLEM 105
Score = 63.2 bits (152), Expect(2) = 1e-32
Identities = 30/38 (78%), Positives = 32/38 (83%), Gaps = 1/38 (2%)
Frame = +3
Query: 294 KSHDMLAPFTAGWQT-DLTPLIIEKSEGSYVYDVNGKK 404
K HDMLAPFTAGWQ+ DL PL+I KSEGSYVYD GKK
Sbjct: 13 KGHDMLAPFTAGWQSADLDPLVIAKSEGSYVYDDTGKK 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,455,610
Number of Sequences: 1393205
Number of extensions: 10709102
Number of successful extensions: 25161
Number of sequences better than 10.0: 299
Number of HSP's better than 10.0 without gapping: 24327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25152
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
