Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002671A_C01 KMC002671A_c01
(711 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566700.1| aminotransferase, putative; protein id: At3g222... 204 1e-51
gb|AAK52899.1|AF351125_1 gamma-aminobutyrate transaminase subuni... 204 1e-51
dbj|BAB03068.1| aminotransferase-like protein [Arabidopsis thali... 204 1e-51
gb|AAL65396.1| putative aminotransferase [Oryza sativa] 202 3e-51
gb|AAC78480.1| putative aminotransferase [Capsicum chinense] 198 7e-50
>ref|NP_566700.1| aminotransferase, putative; protein id: At3g22200.1, supported by
cDNA: gi_14030434, supported by cDNA: gi_14334463
[Arabidopsis thaliana] gi|14334464|gb|AAK59430.1|
putative aminotransferase [Arabidopsis thaliana]
gi|23296654|gb|AAN13140.1| putative aminotransferase
[Arabidopsis thaliana]
Length = 504
Score = 204 bits (519), Expect = 1e-51
Identities = 99/134 (73%), Positives = 117/134 (86%), Gaps = 1/134 (0%)
Frame = -1
Query: 711 VCCAVAIEALKIYKERNILDVVNKISPRFQDGMRAF-SDSPIIGEIRGTGLIMGTEFSDN 535
V CAVAIEALKIYKERNI + V K++PRFQDG++AF S SPIIGE RGTGLI+GTEF DN
Sbjct: 370 VSCAVAIEALKIYKERNIPEYVAKVAPRFQDGVKAFASGSPIIGETRGTGLILGTEFVDN 429
Query: 534 KSPNDPFPSEWGVATYFGEQCEKNGLLVRVAGDNIMMSPPFIISPEEVDELISKYGKALA 355
KSPN+PFP EWGV +FG +C+K+G+LVRVAGD I+MSPP IISPEE+DELIS YGKAL
Sbjct: 430 KSPNEPFPPEWGVGAFFGAECQKHGMLVRVAGDGILMSPPLIISPEEIDELISIYGKALK 489
Query: 354 ATEKRVQELKSQRK 313
ATE++V+ELK+Q K
Sbjct: 490 ATEEKVKELKAQHK 503
>gb|AAK52899.1|AF351125_1 gamma-aminobutyrate transaminase subunit precursor [Arabidopsis
thaliana]
Length = 504
Score = 204 bits (519), Expect = 1e-51
Identities = 99/134 (73%), Positives = 117/134 (86%), Gaps = 1/134 (0%)
Frame = -1
Query: 711 VCCAVAIEALKIYKERNILDVVNKISPRFQDGMRAF-SDSPIIGEIRGTGLIMGTEFSDN 535
V CAVAIEALKIYKERNI + V K++PRFQDG++AF S SPIIGE RGTGLI+GTEF DN
Sbjct: 370 VSCAVAIEALKIYKERNIPEYVAKVAPRFQDGVKAFASGSPIIGETRGTGLILGTEFVDN 429
Query: 534 KSPNDPFPSEWGVATYFGEQCEKNGLLVRVAGDNIMMSPPFIISPEEVDELISKYGKALA 355
KSPN+PFP EWGV +FG +C+K+G+LVRVAGD I+MSPP IISPEE+DELIS YGKAL
Sbjct: 430 KSPNEPFPPEWGVGAFFGAECQKHGMLVRVAGDGILMSPPLIISPEEIDELISIYGKALK 489
Query: 354 ATEKRVQELKSQRK 313
ATE++V+ELK+Q K
Sbjct: 490 ATEEKVKELKAQHK 503
>dbj|BAB03068.1| aminotransferase-like protein [Arabidopsis thaliana]
Length = 466
Score = 204 bits (519), Expect = 1e-51
Identities = 99/134 (73%), Positives = 117/134 (86%), Gaps = 1/134 (0%)
Frame = -1
Query: 711 VCCAVAIEALKIYKERNILDVVNKISPRFQDGMRAF-SDSPIIGEIRGTGLIMGTEFSDN 535
V CAVAIEALKIYKERNI + V K++PRFQDG++AF S SPIIGE RGTGLI+GTEF DN
Sbjct: 332 VSCAVAIEALKIYKERNIPEYVAKVAPRFQDGVKAFASGSPIIGETRGTGLILGTEFVDN 391
Query: 534 KSPNDPFPSEWGVATYFGEQCEKNGLLVRVAGDNIMMSPPFIISPEEVDELISKYGKALA 355
KSPN+PFP EWGV +FG +C+K+G+LVRVAGD I+MSPP IISPEE+DELIS YGKAL
Sbjct: 392 KSPNEPFPPEWGVGAFFGAECQKHGMLVRVAGDGILMSPPLIISPEEIDELISIYGKALK 451
Query: 354 ATEKRVQELKSQRK 313
ATE++V+ELK+Q K
Sbjct: 452 ATEEKVKELKAQHK 465
>gb|AAL65396.1| putative aminotransferase [Oryza sativa]
Length = 231
Score = 202 bits (515), Expect = 3e-51
Identities = 95/132 (71%), Positives = 116/132 (86%)
Frame = -1
Query: 711 VCCAVAIEALKIYKERNILDVVNKISPRFQDGMRAFSDSPIIGEIRGTGLIMGTEFSDNK 532
V CAVAIEALKIY+ERNI D V +ISPRFQ+G++AF+ SPI+GEIRG GLI+GTEF+DNK
Sbjct: 98 VACAVAIEALKIYQERNIPDHVKQISPRFQEGVKAFAGSPIVGEIRGVGLILGTEFADNK 157
Query: 531 SPNDPFPSEWGVATYFGEQCEKNGLLVRVAGDNIMMSPPFIISPEEVDELISKYGKALAA 352
SPNDPFP+EWGV FG +C+K G+LVRVAGDNIMMSPP I++P+EV+EL+S YG AL A
Sbjct: 158 SPNDPFPAEWGVGAIFGAECQKRGMLVRVAGDNIMMSPPLIMTPDEVEELVSIYGDALKA 217
Query: 351 TEKRVQELKSQR 316
TE+RV ELKS++
Sbjct: 218 TEERVAELKSKK 229
>gb|AAC78480.1| putative aminotransferase [Capsicum chinense]
Length = 459
Score = 198 bits (503), Expect = 7e-50
Identities = 95/133 (71%), Positives = 112/133 (83%)
Frame = -1
Query: 711 VCCAVAIEALKIYKERNILDVVNKISPRFQDGMRAFSDSPIIGEIRGTGLIMGTEFSDNK 532
V CAVA+EALKIYKERNI +VVNKIS +FQ+G++AF+DSPIIGEIRGTGL + TEF DNK
Sbjct: 327 VACAVALEALKIYKERNITEVVNKISQKFQEGLKAFADSPIIGEIRGTGLALSTEFVDNK 386
Query: 531 SPNDPFPSEWGVATYFGEQCEKNGLLVRVAGDNIMMSPPFIISPEEVDELISKYGKALAA 352
SPNDPFP EW V TYFG QC K G+LV GD++ M+PPFI+S EE+DELI YGKAL
Sbjct: 387 SPNDPFPYEWAVGTYFGAQCAKYGMLVSSTGDHVNMAPPFILSLEELDELIRIYGKALKD 446
Query: 351 TEKRVQELKSQRK 313
TEKRV+ELKSQ++
Sbjct: 447 TEKRVEELKSQKQ 459
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,670,228
Number of Sequences: 1393205
Number of extensions: 12516636
Number of successful extensions: 32563
Number of sequences better than 10.0: 398
Number of HSP's better than 10.0 without gapping: 31212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32340
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
