Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002666A_C01 KMC002666A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B84549 probable ubiquitin-like protein [imported] - Arabido... 135 4e-31
ref|NP_565407.1| putative ubiquitin-like protein; protein id: At... 135 4e-31
gb|AAK59681.1| putative ubiquitin protein [Arabidopsis thaliana] 128 3e-29
ref|NP_179311.1| putative ubiquitin-like protein; protein id: At... 128 3e-29
gb|AAG13589.1|AC051633_5 putative ubiquitin protein [Oryza sativa] 119 3e-26
>pir||B84549 probable ubiquitin-like protein [imported] - Arabidopsis thaliana
Length = 536
Score = 135 bits (339), Expect = 4e-31
Identities = 70/125 (56%), Positives = 88/125 (70%), Gaps = 2/125 (1%)
Frame = +2
Query: 149 GGEAAAEGTTETNTTDGVNVNINIRCSNGSKFTVQITLDSTVGSFKEAVASNCDIPTDQQ 328
GGEA + + T +GV V +N+RCSNG+KF+V +LDSTV SFKE +A N D+P +QQ
Sbjct: 2 GGEADSR---QPLTAEGVAVAVNVRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQ 58
Query: 329 RLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAASNATGGTNTSGANTTTTNTRGA--GA 502
RLIYKGRILKDDQTL SYGL+ADHTVH+VRGF S+ + +G TT G+ +
Sbjct: 59 RLIYKGRILKDDQTLLSYGLQADHTVHMVRGFVPSSPSAPAANAGNQTTAPQAVGSNDSS 118
Query: 503 NEGGG 517
N GGG
Sbjct: 119 NLGGG 123
>ref|NP_565407.1| putative ubiquitin-like protein; protein id: At2g17190.1, supported
by cDNA: gi_13430493, supported by cDNA: gi_14596080,
supported by cDNA: gi_20148242, supported by cDNA:
gi_21280930 [Arabidopsis thaliana]
gi|13430494|gb|AAK25869.1|AF360159_1 putative ubiquitin
protein [Arabidopsis thaliana]
gi|14596081|gb|AAK68768.1| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|20148243|gb|AAM10012.1| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|20198103|gb|AAD25137.2| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|21280931|gb|AAM44934.1| putative ubiquitin protein
[Arabidopsis thaliana]
Length = 538
Score = 135 bits (339), Expect = 4e-31
Identities = 70/125 (56%), Positives = 88/125 (70%), Gaps = 2/125 (1%)
Frame = +2
Query: 149 GGEAAAEGTTETNTTDGVNVNINIRCSNGSKFTVQITLDSTVGSFKEAVASNCDIPTDQQ 328
GGEA + + T +GV V +N+RCSNG+KF+V +LDSTV SFKE +A N D+P +QQ
Sbjct: 2 GGEADSR---QPLTAEGVAVAVNVRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQ 58
Query: 329 RLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAASNATGGTNTSGANTTTTNTRGA--GA 502
RLIYKGRILKDDQTL SYGL+ADHTVH+VRGF S+ + +G TT G+ +
Sbjct: 59 RLIYKGRILKDDQTLLSYGLQADHTVHMVRGFVPSSPSAPAANAGNQTTAPQAVGSNDSS 118
Query: 503 NEGGG 517
N GGG
Sbjct: 119 NLGGG 123
>gb|AAK59681.1| putative ubiquitin protein [Arabidopsis thaliana]
Length = 551
Score = 128 bits (322), Expect = 3e-29
Identities = 65/119 (54%), Positives = 86/119 (71%)
Frame = +2
Query: 149 GGEAAAEGTTETNTTDGVNVNINIRCSNGSKFTVQITLDSTVGSFKEAVASNCDIPTDQQ 328
GGE +++ + +G V +NIRCSNG+KF+V+ +LDSTV SFKE VA + D+P +QQ
Sbjct: 2 GGEG---DSSQPQSGEGEAVAVNIRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQ 58
Query: 329 RLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAASNATGGTNTSGANTTTTNTRGAGAN 505
RLIYKGRILKDDQTL SYGL+ADHT+H+VRG A S+A + T + TRG G++
Sbjct: 59 RLIYKGRILKDDQTLLSYGLQADHTIHMVRGSAPSSAPPPAPAASQTTAPSVTRGVGSD 117
>ref|NP_179311.1| putative ubiquitin-like protein; protein id: At2g17200.1, supported
by cDNA: gi_14334545 [Arabidopsis thaliana]
gi|25411787|pir||C84549 probable ubiquitin-like protein
[imported] - Arabidopsis thaliana
gi|4584343|gb|AAD25138.1| putative ubiquitin-like
protein [Arabidopsis thaliana]
gi|23296306|gb|AAN13037.1| putative ubiquitin protein
[Arabidopsis thaliana]
Length = 551
Score = 128 bits (322), Expect = 3e-29
Identities = 65/119 (54%), Positives = 86/119 (71%)
Frame = +2
Query: 149 GGEAAAEGTTETNTTDGVNVNINIRCSNGSKFTVQITLDSTVGSFKEAVASNCDIPTDQQ 328
GGE +++ + +G V +NIRCSNG+KF+V+ +LDSTV SFKE VA + D+P +QQ
Sbjct: 2 GGEG---DSSQPQSGEGEAVAVNIRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQ 58
Query: 329 RLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAASNATGGTNTSGANTTTTNTRGAGAN 505
RLIYKGRILKDDQTL SYGL+ADHT+H+VRG A S+A + T + TRG G++
Sbjct: 59 RLIYKGRILKDDQTLLSYGLQADHTIHMVRGSAPSSAPPPAPAASQTTAPSVTRGVGSD 117
>gb|AAG13589.1|AC051633_5 putative ubiquitin protein [Oryza sativa]
Length = 575
Score = 119 bits (297), Expect = 3e-26
Identities = 62/130 (47%), Positives = 82/130 (62%), Gaps = 6/130 (4%)
Frame = +2
Query: 146 GGGEAAAEGTTETNTTDGVNVNI------NIRCSNGSKFTVQITLDSTVGSFKEAVASNC 307
GGGEA E++ + +IRC+NGSKFTV+ LD+TVG+FKE VA +C
Sbjct: 4 GGGEAGGGDGGESSPAAAAAAAVAGAAALHIRCANGSKFTVRADLDATVGAFKEVVAGSC 63
Query: 308 DIPTDQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAASNATGGTNTSGANTTTTNT 487
D+P QQRLIYKGRILKD+QTL+SYG+E DHT+H+VRG A G + A+ +
Sbjct: 64 DVPAAQQRLIYKGRILKDEQTLESYGVETDHTIHMVRG--AGPPAGSAAPAAASPQASAA 121
Query: 488 RGAGANEGGG 517
+G +G G
Sbjct: 122 PSSGPTDGLG 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,394,450
Number of Sequences: 1393205
Number of extensions: 12628718
Number of successful extensions: 75522
Number of sequences better than 10.0: 1207
Number of HSP's better than 10.0 without gapping: 58886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74125
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
