Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002663A_C01 KMC002663A_c01
(357 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO49105.1| NADH dehydrogenase 5 [Disogmus areolator] 35 0.31
gb|AAL67557.1|AF461121_8 O-antigen polymerase Wzy [Escherichia c... 31 4.5
emb|CAB52224.1| EpsV protein [Streptococcus thermophilus] gi|221... 31 4.5
ref|XP_146631.1| similar to fibrinogen-like protein [Mus musculus] 30 5.9
gb|AAG21921.1|AF179276_2 pawn B-II [Paramecium tetraurelia] 30 7.7
>gb|AAO49105.1| NADH dehydrogenase 5 [Disogmus areolator]
Length = 242
Score = 34.7 bits (78), Expect = 0.31
Identities = 19/61 (31%), Positives = 33/61 (53%)
Frame = -3
Query: 184 FRWNQTYTASLTKKNIYSLNQYL*VIFIPFKVLVCNIILLYLAVYFSLQISSIIFLMSLS 5
F WN S+ I+ ++ Y ++FI +L+ ++I+LY + Y + I I FL+ L
Sbjct: 34 FEWNMLLINSIELNMIFIIDYYS-ILFISMVMLISSMIILYSSEYMNNDIHKIRFLILLI 92
Query: 4 L 2
L
Sbjct: 93 L 93
>gb|AAL67557.1|AF461121_8 O-antigen polymerase Wzy [Escherichia coli]
Length = 325
Score = 30.8 bits (68), Expect = 4.5
Identities = 16/60 (26%), Positives = 29/60 (47%)
Frame = -3
Query: 205 WVFFHALFRWNQTYTASLTKKNIYSLNQYL*VIFIPFKVLVCNIILLYLAVYFSLQISSI 26
+VF + ++ W IYS +Y +IFI +L +L+L VY+ +++ I
Sbjct: 122 YVFSNNIYVWRSIICLYFLVLMIYSKTKYKKIIFIGLGLLFHYTFILFLCVYYFCRVNKI 181
>emb|CAB52224.1| EpsV protein [Streptococcus thermophilus]
gi|22138062|gb|AAM93407.1| cpsV [Streptococcus
thermophilus]
Length = 321
Score = 30.8 bits (68), Expect = 4.5
Identities = 21/62 (33%), Positives = 33/62 (52%), Gaps = 3/62 (4%)
Frame = -3
Query: 184 FRWNQTYTASLTKKNIYSLNQYL*VIFIPFKV--LVCNIILLYLAVYFSLQ-ISSIIFLM 14
+ WN+ Y+ L KK Y + QY + FK+ L NI + +YF +Q +SI+ +
Sbjct: 156 YAWNKVYSRHLFKKVCYPVGQYYEDVNTTFKLVNLSQNIFYIDEVLYFYVQRTNSIVNMP 215
Query: 13 SL 8
SL
Sbjct: 216 SL 217
>ref|XP_146631.1| similar to fibrinogen-like protein [Mus musculus]
Length = 95
Score = 30.4 bits (67), Expect = 5.9
Identities = 13/36 (36%), Positives = 18/36 (49%)
Frame = -1
Query: 327 LPLALADIHVNFLGLTHVSLRQSCSSCDHFHARGGW 220
+P + +D+ N L + RQS SC H H GW
Sbjct: 18 MPFSTSDVDNNVCHLACLVDRQSVKSCSHLHKDTGW 53
>gb|AAG21921.1|AF179276_2 pawn B-II [Paramecium tetraurelia]
Length = 268
Score = 30.0 bits (66), Expect = 7.7
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 16/84 (19%)
Frame = -3
Query: 211 HQWVFFHALFRWNQTYTASLTKKNIYSLNQY------L*VIFIPFKVLVCNIILLY---- 62
HQ++ H Q + + L KKNIYS+ QY L ++F+ + + I+L Y
Sbjct: 25 HQYLLDH-----QQKFQSQLKKKNIYSICQYPKGAWFLGLVFVSSGISLLYILLKYDKGD 79
Query: 61 ------LAVYFSLQISSIIFLMSL 8
+ + I I+FL S+
Sbjct: 80 LTLWWRFLIIIGMTILGIVFLTSV 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,736,175
Number of Sequences: 1393205
Number of extensions: 6535983
Number of successful extensions: 13937
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13923
length of database: 448,689,247
effective HSP length: 94
effective length of database: 317,727,977
effective search space used: 7625471448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
