Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002662A_C01 KMC002662A_c01
(716 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC01219.1| putative tubby protein [Oryza sativa (japonica c... 251 5e-66
gb|AAN72008.1| unknown protein [Arabidopsis thaliana] 247 1e-64
ref|NP_173899.1| F-box containing tubby family protein; protein ... 247 1e-64
emb|CAB53492.1| CAA303719.1 protein [Oryza sativa] 231 8e-60
ref|NP_177816.1| Tub family protein, putative; protein id: At1g7... 223 2e-57
>dbj|BAC01219.1| putative tubby protein [Oryza sativa (japonica cultivar-group)]
Length = 448
Score = 251 bits (642), Expect = 5e-66
Identities = 127/183 (69%), Positives = 148/183 (80%), Gaps = 15/183 (8%)
Frame = -3
Query: 714 MHSIPASALDAGGTVPGQPE-LLPRSLDDSFRSI-----------SFSKSL-DHSIEFSS 574
MHSIPAS+++ GG VPGQPE ++PR+L+DSFRS SFSKS+ D S++FSS
Sbjct: 266 MHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTTSFSQSFRSTTSFSKSIMDPSMDFSS 325
Query: 573 SRFSEIGGSCNEDDDGS--KMRPLLLKNKPPRWHEQLLCWCLNFRGRVTVASVKNFQLIA 400
+RFS+I GS DD K RPL+L+NKPPRWHEQL CWCLNFRGRVT+ASVKNFQL+A
Sbjct: 326 ARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVA 385
Query: 399 ATQPPAAGAPTPSQPAPPEHDQIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKL 220
A PP AGAPTPSQP P + +++ILQFGKV +DMFTMDYRYPLSAFQAFAICLSSFDTKL
Sbjct: 386 APSPPPAGAPTPSQPGPADPEKVILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKL 445
Query: 219 ACE 211
ACE
Sbjct: 446 ACE 448
>gb|AAN72008.1| unknown protein [Arabidopsis thaliana]
Length = 267
Score = 247 bits (630), Expect = 1e-64
Identities = 132/179 (73%), Positives = 149/179 (82%), Gaps = 11/179 (6%)
Frame = -3
Query: 714 MHSIPASALDAGGTVPGQPELL---PRSLDDSFRS-ISFSKS-LDH-SIEFSSSRFSEIG 553
M+SIP S+L+ GG+VP QPE L P SLDDSFRS ISFSKS DH S++FSSSRFSE+G
Sbjct: 90 MNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSNISFSKSSFDHRSLDFSSSRFSEMG 149
Query: 552 GSCNEDDDGSKMRPLLLKNKPPRWHEQLLCWCLNFRGRVTVASVKNFQLIAATQPP---- 385
SC+++++ + RPL+LKNK PRWHEQL CWCLNFRGRVTVASVKNFQL+AA QP
Sbjct: 150 ISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGT 209
Query: 384 -AAGAPTPSQPAPPEHDQIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 211
AA APT S PA PE D++ILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 210 GAAAAPT-SAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 267
>ref|NP_173899.1| F-box containing tubby family protein; protein id: At1g25280.1
[Arabidopsis thaliana] gi|25518577|pir||E86382
hypothetical protein F4F7.33 [imported] - Arabidopsis
thaliana gi|11067277|gb|AAG28805.1|AC079374_8 unknown
protein [Arabidopsis thaliana]
Length = 445
Score = 247 bits (630), Expect = 1e-64
Identities = 132/179 (73%), Positives = 149/179 (82%), Gaps = 11/179 (6%)
Frame = -3
Query: 714 MHSIPASALDAGGTVPGQPELL---PRSLDDSFRS-ISFSKS-LDH-SIEFSSSRFSEIG 553
M+SIP S+L+ GG+VP QPE L P SLDDSFRS ISFSKS DH S++FSSSRFSE+G
Sbjct: 268 MNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSNISFSKSSFDHRSLDFSSSRFSEMG 327
Query: 552 GSCNEDDDGSKMRPLLLKNKPPRWHEQLLCWCLNFRGRVTVASVKNFQLIAATQPP---- 385
SC+++++ + RPL+LKNK PRWHEQL CWCLNFRGRVTVASVKNFQL+AA QP
Sbjct: 328 ISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGT 387
Query: 384 -AAGAPTPSQPAPPEHDQIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 211
AA APT S PA PE D++ILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 388 GAAAAPT-SAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
>emb|CAB53492.1| CAA303719.1 protein [Oryza sativa]
Length = 462
Score = 231 bits (589), Expect = 8e-60
Identities = 128/200 (64%), Positives = 143/200 (71%), Gaps = 32/200 (16%)
Frame = -3
Query: 714 MHSIPASALDAGGTVPGQP-ELLPRSLDDSFRSI--SFSKS--LDHSIEFSSSRFSEIGG 550
MHSIPASA++ GG VPGQP ELLPR ++SFRS+ SFSK DHS +FSSSRFSE GG
Sbjct: 263 MHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMATSFSKYSITDHSTDFSSSRFSEFGG 322
Query: 549 SC-------NEDDDGSKMRPLLLKNKPPRWHEQLLCWCLNFRGRVTVASVKNFQLIAATQ 391
+ DD +K RPL+L+NK PRWHEQL CWCLNFRGRVTVASVKNFQLIAA
Sbjct: 323 GALQGQEQEQDGDDVNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAP 382
Query: 390 PPAAGAPT--------------PSQP------APPEHDQIILQFGKVGKDMFTMDYRYPL 271
PA+GA + PSQP + HD +ILQFGKV KDMFTMDYRYPL
Sbjct: 383 QPASGAASEPSQAGQAAQQQTQPSQPSSSSSSSSSNHDTVILQFGKVAKDMFTMDYRYPL 442
Query: 270 SAFQAFAICLSSFDTKLACE 211
SAFQAFAICL+SFDTKLACE
Sbjct: 443 SAFQAFAICLTSFDTKLACE 462
>ref|NP_177816.1| Tub family protein, putative; protein id: At1g76900.1 [Arabidopsis
thaliana] gi|25406477|pir||H96797 hypothetical protein
F22K20.1 [imported] - Arabidopsis thaliana
gi|2829918|gb|AAC00626.1| similar to 'tub' protein
gp|U82468|2072162 [Arabidopsis thaliana]
gi|12322225|gb|AAG51146.1|AC079283_3 Tub family protein,
putative [Arabidopsis thaliana]
gi|22654973|gb|AAM98079.1| At1g76900/F7O12_7
[Arabidopsis thaliana] gi|27764966|gb|AAO23604.1|
At1g76900/F7O12_7 [Arabidopsis thaliana]
Length = 455
Score = 223 bits (568), Expect = 2e-57
Identities = 125/190 (65%), Positives = 144/190 (75%), Gaps = 22/190 (11%)
Frame = -3
Query: 714 MHSIPASALDAGGTVPGQPELL-PRS-LDDSFRSISFSKS----LDHSIEFSSSRFSEIG 553
M+SIPAS+L GGTVPGQP+++ PRS LD+SFRSI+ S S D+S +FSS+RFS+I
Sbjct: 266 MNSIPASSLAEGGTVPGQPDIIVPRSILDESFRSITSSSSRKITYDYSNDFSSARFSDIL 325
Query: 552 GSCNED-----DDGSKMR--PLLLKNKPPRWHEQLLCWCLNFRGRVTVASVKNFQLIAAT 394
G +ED ++G + PL+LKNKPPRWHEQL CWCLNFRGRVTVASVKNFQLIAA
Sbjct: 326 GPLSEDQEVVLEEGKERNSPPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAN 385
Query: 393 QPPAAGAPTP-----SQPAPPEH----DQIILQFGKVGKDMFTMDYRYPLSAFQAFAICL 241
QP P P +QP P D+IILQFGKVGKDMFTMD+RYPLSAFQAFAICL
Sbjct: 386 QPQPQPQPQPQPQPLTQPQPSGQTDGPDKIILQFGKVGKDMFTMDFRYPLSAFQAFAICL 445
Query: 240 SSFDTKLACE 211
SSFDTKLACE
Sbjct: 446 SSFDTKLACE 455
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 622,574,279
Number of Sequences: 1393205
Number of extensions: 13527689
Number of successful extensions: 49137
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 42881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48732
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
