Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002660A_C01 KMC002660A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568012.1| expressed protein; protein id: At4g36970.1 [Ara... 102 5e-21
gb|AAK76561.1| unknown protein [Arabidopsis thaliana] 100 2e-20
ref|NP_683383.1| unknown protein; protein id: At1g45196.1 [Arabi... 77 1e-13
ref|NP_027421.1| expressed protein; protein id: At2g02170.1, sup... 69 3e-11
ref|NP_175789.1| hypothetical protein; protein id: At1g53860.1 [... 67 2e-10
>ref|NP_568012.1| expressed protein; protein id: At4g36970.1 [Arabidopsis thaliana]
gi|25407782|pir||F85436 hypothetical protein AT4g36970
[imported] - Arabidopsis thaliana
gi|4006876|emb|CAB16794.1| hypothetical protein
[Arabidopsis thaliana] gi|7270646|emb|CAB80363.1|
hypothetical protein [Arabidopsis thaliana]
gi|23297309|gb|AAN12938.1| unknown protein [Arabidopsis
thaliana]
Length = 427
Score = 102 bits (253), Expect = 5e-21
Identities = 52/85 (61%), Positives = 67/85 (78%)
Frame = -1
Query: 556 SSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSMD 377
S A +SS DI+E + +SK REEAKI AWE+LQKAKAEAAIRKLE+KLEKK+S+SMD
Sbjct: 297 SEASASSSSWDISEPAMTLSKLQREEAKIAAWENLQKAKAEAAIRKLEVKLEKKKSASMD 356
Query: 376 KILKKLRRAQMKAEKMRSLTPVQQH 302
KIL KL+ A++KA++MR + +H
Sbjct: 357 KILNKLQTAKIKAQEMRRSSVSSEH 381
>gb|AAK76561.1| unknown protein [Arabidopsis thaliana]
Length = 427
Score = 100 bits (248), Expect = 2e-20
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = -1
Query: 556 SSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSMD 377
S A +SS DI+E + +SK REEAKI AWE+LQKAKAEAA RKLE+KLEKK+S+SMD
Sbjct: 297 SEASASSSSWDISEPAMTLSKLQREEAKIAAWENLQKAKAEAATRKLEVKLEKKKSASMD 356
Query: 376 KILKKLRRAQMKAEKMRSLTPVQQH 302
KIL KL+ A++KA++MR + +H
Sbjct: 357 KILNKLQTAKIKAQEMRRSSVSSEH 381
>ref|NP_683383.1| unknown protein; protein id: At1g45196.1 [Arabidopsis thaliana]
Length = 515
Score = 77.4 bits (189), Expect = 1e-13
Identities = 40/58 (68%), Positives = 51/58 (86%), Gaps = 5/58 (8%)
Frame = -1
Query: 484 EEAKIIAWESLQKAKAEAAIRKLE-----MKLEKKRSSSMDKILKKLRRAQMKAEKMR 326
EEA+II+WE+LQKAKAEAAIRKLE MKLEKKRSSSM+KI++K++ A+ +AE+MR
Sbjct: 419 EEARIISWENLQKAKAEAAIRKLEKYFPQMKLEKKRSSSMEKIMRKVKSAEKRAEEMR 476
>ref|NP_027421.1| expressed protein; protein id: At2g02170.1, supported by cDNA:
gi_14326557 [Arabidopsis thaliana]
gi|25410968|pir||G84433 hypothetical protein At2g02170
[imported] - Arabidopsis thaliana
gi|4038035|gb|AAC97217.1| expressed protein [Arabidopsis
thaliana] gi|14326558|gb|AAK60323.1|AF385733_1
At2g02170/F5O4.6 [Arabidopsis thaliana]
gi|27764932|gb|AAO23587.1| At2g02170/F5O4.6 [Arabidopsis
thaliana]
Length = 486
Score = 69.3 bits (168), Expect = 3e-11
Identities = 33/79 (41%), Positives = 56/79 (70%)
Frame = -1
Query: 559 RSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKKRSSSM 380
+S EA+A++ + AE +++F REE KI AWE+ QKAK+EA ++K E+K+E+ + +
Sbjct: 370 KSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQ 429
Query: 379 DKILKKLRRAQMKAEKMRS 323
D+++KKL + KAE+ R+
Sbjct: 430 DRLMKKLATIERKAEEKRA 448
>ref|NP_175789.1| hypothetical protein; protein id: At1g53860.1 [Arabidopsis
thaliana] gi|25405667|pir||G96578 hypothetical protein
T18A20.9 [imported] - Arabidopsis thaliana
gi|6056395|gb|AAF02859.1|AC009324_8 Hypothetical protein
[Arabidopsis thaliana]
Length = 438
Score = 67.0 bits (162), Expect = 2e-10
Identities = 38/91 (41%), Positives = 59/91 (64%)
Frame = -1
Query: 574 DEDLQRSSKEAQASSLDIAESTLDISKFHREEAKIIAWESLQKAKAEAAIRKLEMKLEKK 395
+ +L+RS E++A D + + K+ REEAKI AW +L+ AKAEA RKLE+K++K
Sbjct: 314 ESELRRSVSESKAPLWDDEDDKI---KYQREEAKIQAWVNLENAKAEAQSRKLEVKIQKM 370
Query: 394 RSSSMDKILKKLRRAQMKAEKMRSLTPVQQH 302
RS+ +K++K++ +AE R+ T QQH
Sbjct: 371 RSNLEEKLMKRMDMVHRRAEDWRA-TARQQH 400
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,811,220
Number of Sequences: 1393205
Number of extensions: 9589687
Number of successful extensions: 25660
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 24713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25587
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
