Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002656A_C01 KMC002656A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680196.1| similar to Probable RNA 3'-terminal phosphate c... 126 3e-28
ref|NP_005763.2| RNA cyclase homolog [Homo sapiens] gi|10434565|... 69 7e-11
gb|AAH01025.1|AAH01025 Similar to RNA cyclase homolog [Homo sapi... 69 7e-11
ref|NP_067500.1| RNA cyclase homolog; RNA 3'-terminal phosphate ... 69 7e-11
ref|XP_219820.1| similar to RNA cyclase homolog; RNA 3-terminal ... 68 1e-10
>ref|NP_680196.1| similar to Probable RNA 3'-terminal phosphate cyclase-like
protein.; protein id: At5g22100.1 [Arabidopsis thaliana]
gi|14285704|sp|Q9C578|RCL1_ARATH Probable RNA
3'-terminal phosphate cyclase-like protein
gi|13374869|emb|CAC34503.1| RNA 3'-terminal phosphate
cyclase-like protein [Arabidopsis thaliana]
gi|25083405|gb|AAN72070.1| putative RNA 3'-terminal
phosphate cyclase [Arabidopsis thaliana]
Length = 375
Score = 126 bits (316), Expect = 3e-28
Identities = 66/111 (59%), Positives = 81/111 (72%)
Frame = -1
Query: 644 DTSSLADDVKRDLMPLEDIGKEIANSLLGEIAQCRVVDSTHQGLLFLLCALCPQDVSKVR 465
D + D K++ P ED G E+A+ LL EI + VVDSTHQGLLFLLCAL QDVSKVR
Sbjct: 265 DETGELDVEKKERSPAEDTGVEVASWLLQEIEKGGVVDSTHQGLLFLLCALSEQDVSKVR 324
Query: 464 VGKLSQHGIETLRNIRDFLNLKFIIQPDPNTQSVFLKCVGYGMKNLFRKVS 312
VG LS + +ETLRNI++FL +KF I+PDP T +V LKC G G+ NL RK+S
Sbjct: 325 VGTLSPYAVETLRNIKEFLGVKFAIKPDPLTGTVILKCTGSGLINLSRKLS 375
>ref|NP_005763.2| RNA cyclase homolog [Homo sapiens] gi|10434565|dbj|BAB14300.1|
unnamed protein product [Homo sapiens]
Length = 373
Score = 68.6 bits (166), Expect = 7e-11
Identities = 41/96 (42%), Positives = 53/96 (54%), Gaps = 6/96 (6%)
Frame = -1
Query: 596 EDIGKEIANSLLGEIAQCRVVDSTHQGLLFLLCALCPQDVSKVRVGKLSQHGIETLRNIR 417
ED+G+ A LL EI + VDST+Q L LL L QDVSKV +G LS + IE LR+++
Sbjct: 273 EDLGRNCARLLLEEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLK 332
Query: 416 DFLNLKFIIQPDP------NTQSVFLKCVGYGMKNL 327
F + F I+ P V + CVG G NL
Sbjct: 333 SFFQIMFKIETKPCGEELKGGDKVLMTCVGIGFSNL 368
>gb|AAH01025.1|AAH01025 Similar to RNA cyclase homolog [Homo sapiens]
Length = 373
Score = 68.6 bits (166), Expect = 7e-11
Identities = 41/96 (42%), Positives = 53/96 (54%), Gaps = 6/96 (6%)
Frame = -1
Query: 596 EDIGKEIANSLLGEIAQCRVVDSTHQGLLFLLCALCPQDVSKVRVGKLSQHGIETLRNIR 417
ED+G+ A LL EI + VDST+Q L LL L QDVSKV +G LS + IE LR+++
Sbjct: 273 EDLGRNCARLLLEEIYRGGCVDSTNQSLALLLMTLGQQDVSKVLLGPLSPYTIEFLRHLK 332
Query: 416 DFLNLKFIIQPDP------NTQSVFLKCVGYGMKNL 327
F + F I+ P V + CVG G NL
Sbjct: 333 SFFQIMFKIETKPCGEELKGGDKVLMTCVGIGFSNL 368
>ref|NP_067500.1| RNA cyclase homolog; RNA 3'-terminal phosphate cyclase-like protein
[Mus musculus] gi|13633933|sp|Q9JJT0|RCL1_MOUSE RNA
3'-terminal phosphate cyclase-like protein
gi|7688275|emb|CAB89817.1| RNA 3'-terminal phosphate
cyclase-like protein [Mus musculus]
gi|12844672|dbj|BAB26454.1| unnamed protein product [Mus
musculus] gi|14919376|gb|AAH04574.1| RNA cyclase homolog
[Mus musculus]
Length = 373
Score = 68.6 bits (166), Expect = 7e-11
Identities = 40/96 (41%), Positives = 54/96 (55%), Gaps = 6/96 (6%)
Frame = -1
Query: 596 EDIGKEIANSLLGEIAQCRVVDSTHQGLLFLLCALCPQDVSKVRVGKLSQHGIETLRNIR 417
ED+G+ A LL EI + VDST+Q L+ LL L QDVSKV +G LS + IE LR+++
Sbjct: 273 EDLGRNCAKLLLEEIYRGGCVDSTNQSLVLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLK 332
Query: 416 DFLNLKFIIQPDP------NTQSVFLKCVGYGMKNL 327
F + F ++ P V + CVG G NL
Sbjct: 333 SFFQVMFKVETKPCGEELKGGDKVLMTCVGIGFSNL 368
>ref|XP_219820.1| similar to RNA cyclase homolog; RNA 3-terminal phosphate
cyclase-like protein [Mus musculus] [Rattus norvegicus]
Length = 383
Score = 67.8 bits (164), Expect = 1e-10
Identities = 40/96 (41%), Positives = 53/96 (54%), Gaps = 6/96 (6%)
Frame = -1
Query: 596 EDIGKEIANSLLGEIAQCRVVDSTHQGLLFLLCALCPQDVSKVRVGKLSQHGIETLRNIR 417
ED+G+ A LL EI + VDST Q L+ LL L QDVSKV +G LS + IE LR+++
Sbjct: 283 EDLGRNCAKLLLEEIYRGGCVDSTSQSLVLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLK 342
Query: 416 DFLNLKFIIQPDP------NTQSVFLKCVGYGMKNL 327
F + F ++ P V + CVG G NL
Sbjct: 343 SFFQVMFKVETKPCGEELKGGDKVLMTCVGIGFSNL 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,878,893
Number of Sequences: 1393205
Number of extensions: 11452467
Number of successful extensions: 25269
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25262
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
