KMC002655A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC002655A_C01 KMC002655A_c01
actTGCCAAAGCTTCATTTATTTAAATGCAGTGCAGCATTGTAAGAGAAATCGGACCTTA
AAAAACTTACATTTCTTACAAGAAAATATTTCCAACTCACTGTAAAAAAATTACATCTGC
CTAGCTGCTTTAGCAGCAAATTCCAGAAACAATGTCAACAAGGAAAATGAGAAGAAAAGA
AAAAGAAACATATTTTACCCTTACATTAATACAAGACGATAAATAGCATCCGGCAAAAAT
ATATCAGCAGCAAGGCAACAATGCAGACCAGGGGAAACGGGACTTTTCTCAAATCAAAGT
GAAATAACTGTCCACTGAACACTTCCCAGAATGAAGATTCTATCTGAGGCCAATATCTGA
TTTATGCACTCCCTTCCTTCATATTCACTTTCAGAAGAGCGCTTCTTCTGGCTCGAATAT
GGACGACAAGGGGTCTTGCAATTCTGAGTTTATGGGAAACAGATTACACTGTGCGTGTTG
TGCCATCAATTGGTCCACAAGCACCAAAGCTACCACGGCCTCTACCATGGGTACAGCTCT
CGGGACAACACAGGGATCATGGCGAGCACGGGTTATCAGCTCAGTTTCTTTTCTCTCTCG
AGTAACTGTAAGTTGCTTCTTT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC002655A_C01 KMC002655A_c01
         (622 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P57720|AROC_ARATH Chorismate synthase, chloroplast precursor ...   110  1e-23
ref|NP_564534.1| chorismate synthase, putative; protein id: At1g...   110  1e-23
sp|Q42884|ARC1_LYCES Chorismate synthase 1, chloroplast precurso...   110  1e-23
sp|P27793|AROC_CORSE Chorismate synthase, chloroplast precursor ...   105  6e-22
sp|Q42885|ARC2_LYCES Chorismate synthase 2, chloroplast precurso...   103  2e-21

>sp|P57720|AROC_ARATH Chorismate synthase, chloroplast precursor
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
           gi|25292275|pir||C96526 probable chorismate synthase
           [imported] - Arabidopsis thaliana
           gi|12321114|gb|AAG50662.1|AC084242_6 chorismate
           synthase, putative [Arabidopsis thaliana]
          Length = 435

 Score =  110 bits (276), Expect = 1e-23
 Identities = 55/74 (74%), Positives = 65/74 (87%)
 Frame = -2

Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
           +KQ TVTR++ ETE+I R RHDPCVVPRAVPMVEA+VALVLVDQLMAQ+AQC+LFPIN E
Sbjct: 360 RKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPINPE 419

Query: 441 LQDPLSSIFEPEEA 400
           LQ+PL  I +P+ A
Sbjct: 420 LQEPL-QIEQPQNA 432

>ref|NP_564534.1| chorismate synthase, putative; protein id: At1g48850.1, supported
           by cDNA: gi_15982823 [Arabidopsis thaliana]
           gi|15982824|gb|AAL09759.1| At1g48850/T24P22_3
           [Arabidopsis thaliana]
          Length = 436

 Score =  110 bits (276), Expect = 1e-23
 Identities = 55/74 (74%), Positives = 65/74 (87%)
 Frame = -2

Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
           +KQ TVTR++ ETE+I R RHDPCVVPRAVPMVEA+VALVLVDQLMAQ+AQC+LFPIN E
Sbjct: 361 RKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPINPE 420

Query: 441 LQDPLSSIFEPEEA 400
           LQ+PL  I +P+ A
Sbjct: 421 LQEPL-QIEQPQNA 433

>sp|Q42884|ARC1_LYCES Chorismate synthase 1, chloroplast precursor
           (5-enolpyruvylshikimate-3-phosphate phospholyase 1)
           gi|542026|pir||S40410 chorismate synthase (EC 4.2.3.5) 1
           precursor - tomato gi|410482|emb|CAA79859.1| chorismate
           synthase 1 [Lycopersicon esculentum]
          Length = 440

 Score =  110 bits (275), Expect = 1e-23
 Identities = 55/74 (74%), Positives = 63/74 (84%)
 Frame = -2

Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
           +KQ TVTR++ ETELI R RHDPCVVPRAVPMVEA+VALVLVDQLMAQ++QC +FPIN E
Sbjct: 365 RKQQTVTRDKHETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYSQCMMFPINPE 424

Query: 441 LQDPLSSIFEPEEA 400
           LQ+PL S   PE A
Sbjct: 425 LQEPLQS--SPESA 436

>sp|P27793|AROC_CORSE Chorismate synthase, chloroplast precursor
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
           gi|99502|pir||A41197 chorismate synthase (EC 4.2.3.5)
           precursor [validated] - pink corydalis
           gi|18256|emb|CAA43034.1| chorismate synthase [Corydalis
           sempervirens]
          Length = 447

 Score =  105 bits (261), Expect = 6e-22
 Identities = 53/66 (80%), Positives = 57/66 (86%)
 Frame = -2

Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
           KKQ TVTRER+E ELI R RHDPCVVPRAVPMVEA+VALVL+DQLM QHAQ NLF IN  
Sbjct: 369 KKQNTVTREREEIELIARGRHDPCVVPRAVPMVEAMVALVLLDQLMLQHAQGNLFSINPA 428

Query: 441 LQDPLS 424
           LQ+PLS
Sbjct: 429 LQEPLS 434

>sp|Q42885|ARC2_LYCES Chorismate synthase 2, chloroplast precursor
           (5-enolpyruvylshikimate-3-phosphate phospholyase 2)
           gi|542027|pir||S40409 chorismate synthase (EC 4.2.3.5) 2
           precursor - tomato gi|410484|emb|CAA79854.1| chorismate
           synthase 2 [Lycopersicon esculentum]
          Length = 431

 Score =  103 bits (256), Expect = 2e-21
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = -2

Query: 621 KKQLTVTRERKETELITRARHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSE 442
           +KQ TV+R++ ETELI R RHDPCVVPRAVPMVEA+VALVLVDQLM Q+AQC LFP+N  
Sbjct: 359 RKQHTVSRDKHETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMTQYAQCMLFPVNLT 418

Query: 441 LQDPL 427
           LQ+PL
Sbjct: 419 LQEPL 423

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,103,540
Number of Sequences: 1393205
Number of extensions: 11462698
Number of successful extensions: 33293
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 31299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33207
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MF053h01_f BP031111 1 453
2 MPDL049a08_f AV778959 2 545
3 MR048b01_f BP079687 5 404
4 SPDL043c03_f BP054698 7 489
5 MF074b01_f BP032208 8 396
6 MF051c07_f BP030967 8 533
7 MF064b07_f BP031683 10 522
8 SPD036h10_f BP046907 12 518
9 MF045d12_f BP030670 13 561
10 MF010b05_f BP028732 14 497
11 MPDL038f04_f AV778437 16 446
12 MR081e06_f BP082237 43 274
13 GNf087h09 BP073821 43 466
14 SPD004c08_f BP044306 45 456
15 SPD059f12_f BP048713 45 180
16 MFB053f04_f BP037857 58 413
17 MF048h12_f BP030847 59 550
18 GENf091c06 BP062158 63 583
19 MPD025b03_f AV771685 76 645




Lotus japonicus
Kazusa DNA Research Institute