Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002654A_C01 KMC002654A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T48902 sulfate transporter AST12 [imported] - Arabidopsis t... 181 4e-45
pir||T51161 hypothetical protein [imported] - Arabidopsis thalia... 181 4e-45
ref|NP_190758.1| sulfate transporter ATST1; protein id: At3g5189... 181 4e-45
pir||T49069 sulfate transporter (ATST1) - Arabidopsis thaliana g... 181 4e-45
pir||T48901 sulfate transporter ATST1 [imported] - Arabidopsis t... 181 4e-45
>pir||T48902 sulfate transporter AST12 [imported] - Arabidopsis thaliana
gi|2967456|dbj|BAA25175.1| sulfate transporter
[Arabidopsis thaliana]
Length = 646
Score = 181 bits (459), Expect = 4e-45
Identities = 90/147 (61%), Positives = 108/147 (73%)
Frame = -2
Query: 479 HHGVNFTAQRGFYTGL*SGLKETVFPDDPFRQIKEEENRSRRIIKGVQYYVPIFEWLPNY 300
HH V + F L +KET+FPDDPFRQ K + N SR+ + G++Y++PIFEW P Y
Sbjct: 19 HHTVEAPQPQPFLKSLQYSVKETLFPDDPFRQFKNQ-NASRKFVLGLKYFLPIFEWAPRY 77
Query: 299 TLRLFISDFISGLTITSLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAIFGSSRHMAVG 120
L+ F SD I+G+TI SLAIPQGISYAKLANLPPI+GLYSSFVPPLVYA+ GSSR +AVG
Sbjct: 78 NLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAVLGSSRDLAVG 137
Query: 119 TLAAASLLIGQTISTVASPETDPTLYL 39
T+A ASLL G +S E DP LYL
Sbjct: 138 TVAVASLLTGAMLSKEVDAEKDPKLYL 164
>pir||T51161 hypothetical protein [imported] - Arabidopsis thaliana
gi|3068717|gb|AAC14417.1| unknown [Arabidopsis thaliana]
Length = 703
Score = 181 bits (459), Expect = 4e-45
Identities = 90/147 (61%), Positives = 108/147 (73%)
Frame = -2
Query: 479 HHGVNFTAQRGFYTGL*SGLKETVFPDDPFRQIKEEENRSRRIIKGVQYYVPIFEWLPNY 300
HH V + F L +KET+FPDDPFRQ K + N SR+ + G++Y++PIFEW P Y
Sbjct: 64 HHTVEAPQPQPFLKSLQYSVKETLFPDDPFRQFKNQ-NASRKFVLGLKYFLPIFEWAPRY 122
Query: 299 TLRLFISDFISGLTITSLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAIFGSSRHMAVG 120
L+ F SD I+G+TI SLAIPQGISYAKLANLPPI+GLYSSFVPPLVYA+ GSSR +AVG
Sbjct: 123 NLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAVLGSSRDLAVG 182
Query: 119 TLAAASLLIGQTISTVASPETDPTLYL 39
T+A ASLL G +S E DP LYL
Sbjct: 183 TVAVASLLTGAMLSKEVDAEKDPKLYL 209
>ref|NP_190758.1| sulfate transporter ATST1; protein id: At3g51895.1, supported by
cDNA: gi_20466813, supported by cDNA: gi_2285884
[Arabidopsis thaliana]
Length = 658
Score = 181 bits (459), Expect = 4e-45
Identities = 90/147 (61%), Positives = 108/147 (73%)
Frame = -2
Query: 479 HHGVNFTAQRGFYTGL*SGLKETVFPDDPFRQIKEEENRSRRIIKGVQYYVPIFEWLPNY 300
HH V + F L +KET+FPDDPFRQ K + N SR+ + G++Y++PIFEW P Y
Sbjct: 19 HHTVEAPQPQPFLKSLQYSVKETLFPDDPFRQFKNQ-NASRKFVLGLKYFLPIFEWAPRY 77
Query: 299 TLRLFISDFISGLTITSLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAIFGSSRHMAVG 120
L+ F SD I+G+TI SLAIPQGISYAKLANLPPI+GLYSSFVPPLVYA+ GSSR +AVG
Sbjct: 78 NLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAVLGSSRDLAVG 137
Query: 119 TLAAASLLIGQTISTVASPETDPTLYL 39
T+A ASLL G +S E DP LYL
Sbjct: 138 TVAVASLLTGAMLSKEVDAEKDPKLYL 164
>pir||T49069 sulfate transporter (ATST1) - Arabidopsis thaliana
gi|4678919|emb|CAB41310.1| sulfate transporter (ATST1)
[Arabidopsis thaliana] gi|20466814|gb|AAM20724.1|
sulfate transporter ATST1 [Arabidopsis thaliana]
Length = 658
Score = 181 bits (459), Expect = 4e-45
Identities = 90/147 (61%), Positives = 108/147 (73%)
Frame = -2
Query: 479 HHGVNFTAQRGFYTGL*SGLKETVFPDDPFRQIKEEENRSRRIIKGVQYYVPIFEWLPNY 300
HH V + F L +KET+FPDDPFRQ K + N SR+ + G++Y++PIFEW P Y
Sbjct: 19 HHTVEAPQPQPFLKSLQYSVKETLFPDDPFRQFKNQ-NASRKFVLGLKYFLPIFEWAPRY 77
Query: 299 TLRLFISDFISGLTITSLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAIFGSSRHMAVG 120
L+ F SD I+G+TI SLAIPQGISYAKLANLPPI+GLYSSFVPPLVYA+ GSSR +AVG
Sbjct: 78 NLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAVLGSSRDLAVG 137
Query: 119 TLAAASLLIGQTISTVASPETDPTLYL 39
T+A ASLL G +S E DP LYL
Sbjct: 138 TVAVASLLTGAMLSKEVDAEKDPKLYL 164
>pir||T48901 sulfate transporter ATST1 [imported] - Arabidopsis thaliana
gi|2285885|dbj|BAA21657.1| sulfate transporter
[Arabidopsis thaliana]
Length = 658
Score = 181 bits (459), Expect = 4e-45
Identities = 90/147 (61%), Positives = 108/147 (73%)
Frame = -2
Query: 479 HHGVNFTAQRGFYTGL*SGLKETVFPDDPFRQIKEEENRSRRIIKGVQYYVPIFEWLPNY 300
HH V + F L +KET+FPDDPFRQ K + N SR+ + G++Y++PIFEW P Y
Sbjct: 19 HHTVEAPQPQPFLKSLQYSVKETLFPDDPFRQFKNQ-NASRKFVLGLKYFLPIFEWAPRY 77
Query: 299 TLRLFISDFISGLTITSLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAIFGSSRHMAVG 120
L+ F SD I+G+TI SLAIPQGISYAKLANLPPI+GLYSSFVPPLVYA+ GSSR +AVG
Sbjct: 78 NLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAVLGSSRDLAVG 137
Query: 119 TLAAASLLIGQTISTVASPETDPTLYL 39
T+A ASLL G +S E DP LYL
Sbjct: 138 TVAVASLLTGAMLSKEVDAEKDPKLYL 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,575,904
Number of Sequences: 1393205
Number of extensions: 12492352
Number of successful extensions: 45268
Number of sequences better than 10.0: 413
Number of HSP's better than 10.0 without gapping: 41412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44806
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
