Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002653A_C02 KMC002653A_c02
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200929.1| syntaxin SNAP33; protein id: At5g61210.1, suppo... 183 2e-45
gb|AAM62553.1| snap25a [Arabidopsis thaliana] 183 2e-45
ref|NP_172842.1| synaptosomal associated protein (SNAP25A), puta... 150 1e-35
ref|NP_196405.1| SNAP25 - like protein; protein id: At5g07880.1 ... 117 1e-25
ref|NP_524298.1| Synapse protein 24 CG9474-PA gi|7299247|gb|AAF5... 54 1e-06
>ref|NP_200929.1| syntaxin SNAP33; protein id: At5g61210.1, supported by cDNA:
14562., supported by cDNA: gi_16323046 [Arabidopsis
thaliana] gi|27805727|sp|Q9S7P9|SN33_ARATH SNAP25
homologous protein SNAP33 (AtSNAP33)
(Synaptosomal-associated protein SNAP25-like 1) (SNAP-25
like protein 1) (Snap25a) gi|5731763|emb|CAB52582.1|
SNAP33 protein [Arabidopsis thaliana]
gi|5731764|emb|CAB52583.1| SNAP33B protein [Arabidopsis
thaliana] gi|9759467|dbj|BAB10383.1| SNAP25A protein
[Arabidopsis thaliana] gi|16323047|gb|AAL15258.1|
AT5g61210/maf19_210 [Arabidopsis thaliana]
gi|18072736|emb|CAC79615.1| SNAP-25 like protein
[Arabidopsis thaliana] gi|22655332|gb|AAM98258.1|
At5g61210/maf19_210 [Arabidopsis thaliana]
Length = 300
Score = 183 bits (464), Expect = 2e-45
Identities = 89/127 (70%), Positives = 105/127 (82%)
Frame = -3
Query: 599 KTWKPKKTRAIRGPVIFGDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQK 420
KTWKPKKTR I GPV+ D+ +R+ NHLE+REKLGL SAPRGQ++ R P ES+ A Q+
Sbjct: 174 KTWKPKKTRPINGPVVTRDDSPTRRVNHLEKREKLGLNSAPRGQSRTREPLPESADAYQR 233
Query: 419 VEFEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDDVEELNFRVKGANQR 240
VE EK KQDD LSDLSD+LGELK+MA+DMGSEIE+ NK L HL DDV+ELNFRV+ +NQR
Sbjct: 234 VEMEKAKQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQR 293
Query: 239 GRRLLGK 219
GRRLLGK
Sbjct: 294 GRRLLGK 300
>gb|AAM62553.1| snap25a [Arabidopsis thaliana]
Length = 300
Score = 183 bits (464), Expect = 2e-45
Identities = 89/127 (70%), Positives = 105/127 (82%)
Frame = -3
Query: 599 KTWKPKKTRAIRGPVIFGDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQK 420
KTWKPKKTR I GPV+ D+ +R+ NHLE+REKLGL SAPRGQ++ R P ES+ A Q+
Sbjct: 174 KTWKPKKTRPINGPVVTRDDSPTRRVNHLEKREKLGLNSAPRGQSRTREPLPESADAYQR 233
Query: 419 VEFEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDDVEELNFRVKGANQR 240
VE EK KQDD LSDLSD+LGELK+MA+DMGSEIE+ NK L HL DDV+ELNFRV+ +NQR
Sbjct: 234 VEMEKAKQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQR 293
Query: 239 GRRLLGK 219
GRRLLGK
Sbjct: 294 GRRLLGK 300
>ref|NP_172842.1| synaptosomal associated protein (SNAP25A), putative; protein id:
At1g13890.1 [Arabidopsis thaliana]
gi|27805725|sp|Q9LMG8|SN30_ARATH Putative SNAP25
homologous protein SNAP30 (AtSNAP30)
(Synaptosomal-associated protein SNAP25-like 3)
gi|25372769|pir||A86272 protein F16A14.10 [imported] -
Arabidopsis thaliana gi|8778388|gb|AAF79396.1|AC068197_6
F16A14.10 [Arabidopsis thaliana]
Length = 263
Score = 150 bits (379), Expect = 1e-35
Identities = 76/127 (59%), Positives = 94/127 (73%)
Frame = -3
Query: 599 KTWKPKKTRAIRGPVIFGDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQK 420
K WKPKKT+ I GP+I D P + NH E+REKLGL + +G++ + + + ALQK
Sbjct: 139 KPWKPKKTKNITGPMITPDKPSKKSENHKEEREKLGLGA--KGRSSSQPALDQPTNALQK 196
Query: 419 VEFEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDDVEELNFRVKGANQR 240
VE EK KQDD LSDLSD+LG+LK MA+DMGSEI++ NKAL HL DDV+ELN RV+GANQR
Sbjct: 197 VEQEKAKQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGANQR 256
Query: 239 GRRLLGK 219
R LL K
Sbjct: 257 ARHLLSK 263
>ref|NP_196405.1| SNAP25 - like protein; protein id: At5g07880.1 [Arabidopsis
thaliana] gi|27805728|sp|Q9SD96|SN29_ARATH SNAP25
homologous protein SNAP29 (AtSNAP29)
(Synaptosomal-associated protein SNAP25-like 2)
gi|11358851|pir||T45613 SNAP25-like protein -
Arabidopsis thaliana gi|6562302|emb|CAB62600.1|
SNAP25-like protein [Arabidopsis thaliana]
gi|10176722|dbj|BAB09952.1| synaptosomal associated
protein SNAP25-like [Arabidopsis thaliana]
Length = 251
Score = 117 bits (293), Expect = 1e-25
Identities = 70/128 (54%), Positives = 89/128 (68%), Gaps = 1/128 (0%)
Frame = -3
Query: 599 KTWKPKKTRAIRGPVIF-GDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQ 423
+TWKPKK+R+I GPVI GD+P R+ L+ REKLGL P + K +T P E+ A Q
Sbjct: 130 RTWKPKKSRSITGPVITKGDSP-KRKVIDLKTREKLGLN--PSLKPKSKTLP-EAVDAYQ 185
Query: 422 KVEFEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDDVEELNFRVKGANQ 243
K + KQD+AL+DLS LLGELK+MA+DMG+ IER L HL D+ +ELN+RVK +NQ
Sbjct: 186 KTQI--AKQDEALTDLSALLGELKNMAVDMGTAIERQTNELDHLQDNADELNYRVKQSNQ 243
Query: 242 RGRRLLGK 219
R R LL K
Sbjct: 244 RARYLLRK 251
>ref|NP_524298.1| Synapse protein 24 CG9474-PA gi|7299247|gb|AAF54443.1| CG9474-PA
[Drosophila melanogaster]
gi|8163739|gb|AAF73834.1|AF187106_1 SNAP-24 protein
[Drosophila melanogaster]
Length = 212
Score = 54.3 bits (129), Expect = 1e-06
Identities = 26/79 (32%), Positives = 43/79 (53%)
Frame = -3
Query: 461 MRTPPHESSTALQKVEFEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDD 282
M PP A + + + D+ L ++ +LG L++MA+DMGSE+E NK + ++
Sbjct: 132 MGAPPQSGYVARITNDAREDEMDENLGQVNSMLGNLRNMALDMGSELENQNKQVDRINAK 191
Query: 281 VEELNFRVKGANQRGRRLL 225
+ N R+ G N+R LL
Sbjct: 192 GDANNIRMDGVNKRANNLL 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,375,070
Number of Sequences: 1393205
Number of extensions: 9710761
Number of successful extensions: 26288
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 25061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26239
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
