Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002652A_C01 KMC002652A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702441.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.0
ref|NP_763373.1| Hypothetical protein predicted by GeneMark [Vib... 33 3.0
>ref|NP_702441.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497625|gb|AAN37165.1|AE014825_24 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 3455
Score = 33.1 bits (74), Expect = 3.0
Identities = 20/72 (27%), Positives = 36/72 (49%)
Frame = +3
Query: 60 LTHNIKIQESNDLSWTKRRCS*LKHLSFLHISHKGQPWRSSSCNFTFLQEIVTIKPTYNK 239
+THN +N+ + + S + +IS P ++ N ++ +T+ TYN
Sbjct: 1646 ITHNNNNNNNNNSNNSNNDISAVSLFDSSNISKMYNPQNKNNLNNLQVRNKLTVSSTYNM 1705
Query: 240 FVVRKKEQKRLL 275
V+KKE+K+LL
Sbjct: 1706 RDVKKKEKKKLL 1717
>ref|NP_763373.1| Hypothetical protein predicted by GeneMark [Vibrio vulnificus
CMCP6] gi|27359419|gb|AAO08363.1|AE016813_115
Hypothetical protein predicted by GeneMark [Vibrio
vulnificus CMCP6]
Length = 87
Score = 33.1 bits (74), Expect = 3.0
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 388 KSVHIALNWYPNIHLYLQIVAADTQ*LNFMVASKGISTGLKVCPFSFIRLLAPNYTT 558
+ V ++ W PN + ++IVA + + KG STG+ P S I L+ +TT
Sbjct: 10 RDVFVSSKW-PNFEIEIEIVATSNEGKKYQFRPKGQSTGILFFPESDIDLMGLKFTT 65
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,208,163
Number of Sequences: 1393205
Number of extensions: 10815589
Number of successful extensions: 20913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20591
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
