Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002651A_C02 KMC002651A_c02
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564079.1| expressed protein; protein id: At1g19330.1, sup... 122 4e-27
pir||F86326 protein F18O14.5 [imported] - Arabidopsis thaliana g... 122 4e-27
ref|NP_177643.1| hypothetical protein; protein id: At1g75060.1 [... 114 6e-25
gb|AAL58137.1|AC093093_10 hypothetical protein [Oryza sativa (ja... 86 2e-16
gb|AAL79349.1|AC099402_13 Hypothetical protein [Oryza sativa] 86 2e-16
>ref|NP_564079.1| expressed protein; protein id: At1g19330.1, supported by cDNA:
4026. [Arabidopsis thaliana] gi|21593580|gb|AAM65547.1|
unknown [Arabidopsis thaliana]
Length = 247
Score = 122 bits (305), Expect = 4e-27
Identities = 57/67 (85%), Positives = 62/67 (92%)
Frame = -1
Query: 520 KVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAK 341
KVDLSKLEM AL YWRHFNLVDA+PNPSKEQL+D+VQRHFMSQQMDELQVI+GFVQAAK
Sbjct: 166 KVDLSKLEMPALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAK 225
Query: 340 RLKTMCK 320
R+K CK
Sbjct: 226 RMKKACK 232
>pir||F86326 protein F18O14.5 [imported] - Arabidopsis thaliana
gi|8778446|gb|AAF79454.1|AC025808_36 F18O14.5
[Arabidopsis thaliana]
Length = 242
Score = 122 bits (305), Expect = 4e-27
Identities = 57/67 (85%), Positives = 62/67 (92%)
Frame = -1
Query: 520 KVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAK 341
KVDLSKLEM AL YWRHFNLVDA+PNPSKEQL+D+VQRHFMSQQMDELQVI+GFVQAAK
Sbjct: 161 KVDLSKLEMPALLNYWRHFNLVDAIPNPSKEQLIDIVQRHFMSQQMDELQVIVGFVQAAK 220
Query: 340 RLKTMCK 320
R+K CK
Sbjct: 221 RMKKACK 227
>ref|NP_177643.1| hypothetical protein; protein id: At1g75060.1 [Arabidopsis
thaliana] gi|25372871|pir||F96780 hypothetical protein
F9E10.9 [imported] - Arabidopsis thaliana
gi|12323907|gb|AAG51933.1|AC013258_27 hypothetical
protein; 20082-21886 [Arabidopsis thaliana]
Length = 242
Score = 114 bits (286), Expect = 6e-25
Identities = 52/67 (77%), Positives = 62/67 (91%)
Frame = -1
Query: 520 KVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAAK 341
KVDL+KL+MAAL RYWRHFNLVDA+PNP+KEQL+D++QRHFMSQQMDELQVI+GFVQAA
Sbjct: 167 KVDLTKLDMAALLRYWRHFNLVDALPNPTKEQLIDIIQRHFMSQQMDELQVIVGFVQAAT 226
Query: 340 RLKTMCK 320
+K C+
Sbjct: 227 GMKKACQ 233
>gb|AAL58137.1|AC093093_10 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 295
Score = 86.3 bits (212), Expect = 2e-16
Identities = 47/68 (69%), Positives = 49/68 (71%)
Frame = -1
Query: 523 TKVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAA 344
TKVDLSKLEM ALWRYWRHFNL DA PNPS+EQLVD VQRHF+S QAA
Sbjct: 240 TKVDLSKLEMTALWRYWRHFNL-DASPNPSREQLVDAVQRHFVS-------------QAA 285
Query: 343 KRLKTMCK 320
KRLKT K
Sbjct: 286 KRLKTNVK 293
>gb|AAL79349.1|AC099402_13 Hypothetical protein [Oryza sativa]
Length = 368
Score = 86.3 bits (212), Expect = 2e-16
Identities = 47/68 (69%), Positives = 49/68 (71%)
Frame = -1
Query: 523 TKVDLSKLEMAALWRYWRHFNLVDAVPNPSKEQLVDVVQRHFMSQQMDELQVIMGFVQAA 344
TKVDLSKLEM ALWRYWRHFNL DA PNPS+EQLVD VQRHF+S QAA
Sbjct: 313 TKVDLSKLEMTALWRYWRHFNL-DASPNPSREQLVDAVQRHFVS-------------QAA 358
Query: 343 KRLKTMCK 320
KRLKT K
Sbjct: 359 KRLKTNVK 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,956,533
Number of Sequences: 1393205
Number of extensions: 8782659
Number of successful extensions: 18321
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18312
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
