Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002650A_C01 KMC002650A_c01
(831 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P26585|HMGL_SOYBN HMG1/2-like protein (SB11 protein) gi|99914... 241 1e-62
pir||S40122 high mobility group protein HMG-1 - garden pea gi|43... 223 2e-57
ref|NP_564123.1| Expressed protein; protein id: At1g20693.1, sup... 187 2e-46
pir||F86339 protein F2D10.18 [imported] - Arabidopsis thaliana g... 186 5e-46
sp|P40620|HMGL_VICFA HMG1/2-like protein gi|541981|pir||S39556 h... 184 1e-45
>sp|P26585|HMGL_SOYBN HMG1/2-like protein (SB11 protein) gi|99914|pir||S22309 high
mobility group protein HMG-1 - soybean
gi|18645|emb|CAA41200.1| HMG-1 like protein gene
[Glycine max]
Length = 152
Score = 241 bits (615), Expect = 1e-62
Identities = 119/153 (77%), Positives = 138/153 (89%), Gaps = 1/153 (0%)
Frame = -2
Query: 767 MKGGKSRTESKRAEPKLAVNKKAGGATKPARGA-KGKAATDPNKPERPPSAFFVCMEDFR 591
MKGGKS+TESKRA+PKLAVNKK G ATK + A KGKAA DPNKP+RPPSAFFV ME+FR
Sbjct: 1 MKGGKSKTESKRADPKLAVNKK-GAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFR 59
Query: 590 KIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAEG 411
K+FNKE+PENKAVSAVGKAAGAKWK+MS+AEKAPYVAK+EKRK +YEK M+AYNKKQAEG
Sbjct: 60 KVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
Query: 410 PAAADEEESEKSVSEVNDQDEDDDDSDEDDDDE 312
P DEEESEKSVSEVND+D+D++ S E++DD+
Sbjct: 120 PTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152
>pir||S40122 high mobility group protein HMG-1 - garden pea
gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 223 bits (569), Expect = 2e-57
Identities = 114/154 (74%), Positives = 133/154 (86%), Gaps = 2/154 (1%)
Frame = -2
Query: 767 MKGGKSRTESKRAEPKLAVNKKAGGATKPARG-AKGKAATDPNKPERPPSAFFVCMEDFR 591
MKGGKS+ ESK+AE KLAVNKK ATK + AKGK DPNKP+RPPSAFFV MEDFR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAPATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMEDFR 60
Query: 590 KIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAEG 411
K F K N +NKAVSAVGKAAGAKWKSM+EAEKAPY AKAEKRKA+YEK+MK+YNKKQAEG
Sbjct: 61 KQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAEKRKAEYEKSMKSYNKKQAEG 120
Query: 410 PAAA-DEEESEKSVSEVNDQDEDDDDSDEDDDDE 312
PAA +EEESEKS SEV+D+++D+++S+E+DDDE
Sbjct: 121 PAAVEEEEESEKSESEVHDENDDEEESEEEDDDE 154
>ref|NP_564123.1| Expressed protein; protein id: At1g20693.1, supported by cDNA:
11615., supported by cDNA: gi_17104698 [Arabidopsis
thaliana] gi|11346368|pir||T51597 high mobility group
protein HMG-beta1 [validated] - Arabidopsis thaliana
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis
thaliana] gi|13877971|gb|AAK44063.1|AF370248_1 unknown
protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis
thaliana] gi|21536964|gb|AAM61305.1| unknown
[Arabidopsis thaliana] gi|26452113|dbj|BAC43146.1|
unknown protein [Arabidopsis thaliana]
Length = 144
Score = 187 bits (474), Expect = 2e-46
Identities = 98/154 (63%), Positives = 125/154 (80%), Gaps = 2/154 (1%)
Frame = -2
Query: 767 MKGGKSRTESKRAEPKLAVNKKAGGATKPARGA-KGKAAT-DPNKPERPPSAFFVCMEDF 594
MKG KS+TE++ + KL+V KK PA+GA +GKAA DPNKP+RP SAFFV MEDF
Sbjct: 1 MKGAKSKTETRSS--KLSVTKK------PAKGAGRGKAAAKDPNKPKRPASAFFVFMEDF 52
Query: 593 RKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAE 414
R+ F KENP+NK+V+ VGKAAG KWKS+S++EKAPYVAKAEKRK +YEK +KAYNKK E
Sbjct: 53 RETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEE 112
Query: 413 GPAAADEEESEKSVSEVNDQDEDDDDSDEDDDDE 312
GP ++EES+KSVSEVND+D+ +D S+E++DD+
Sbjct: 113 GP--KEDEESDKSVSEVNDEDDAEDGSEEEEDDD 144
>pir||F86339 protein F2D10.18 [imported] - Arabidopsis thaliana
gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18
[Arabidopsis thaliana]
Length = 662
Score = 186 bits (471), Expect = 5e-46
Identities = 95/154 (61%), Positives = 123/154 (79%)
Frame = -2
Query: 773 SVMKGGKSRTESKRAEPKLAVNKKAGGATKPARGAKGKAATDPNKPERPPSAFFVCMEDF 594
S+MKG KS+ E++ KL+V KK PA+GAKG AA DPNKP+RP SAFFV MEDF
Sbjct: 520 SIMKGAKSKAETRST--KLSVTKK------PAKGAKG-AAKDPNKPKRPSSAFFVFMEDF 570
Query: 593 RKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAE 414
R + +E+P+NK+V+AVGKA G KWKS+S++EKAPYVAKA+KRK +YEK MKAYNKK E
Sbjct: 571 RVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEE 630
Query: 413 GPAAADEEESEKSVSEVNDQDEDDDDSDEDDDDE 312
GP ++EES+KSVSEVND+D+ +D S+E++DD+
Sbjct: 631 GP--KEDEESDKSVSEVNDEDDAEDGSEEEEDDD 662
Score = 182 bits (463), Expect = 4e-45
Identities = 97/151 (64%), Positives = 122/151 (80%), Gaps = 2/151 (1%)
Frame = -2
Query: 773 SVMKGGKSRTESKRAEPKLAVNKKAGGATKPARGA-KGKAAT-DPNKPERPPSAFFVCME 600
S+MKG KS+TE++ + KL+V KK PA+GA +GKAA DPNKP+RP SAFFV ME
Sbjct: 376 SIMKGAKSKTETRSS--KLSVTKK------PAKGAGRGKAAAKDPNKPKRPASAFFVFME 427
Query: 599 DFRKIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQ 420
DFR+ F KENP+NK+V+ VGKAAG KWKS+S++EKAPYVAKAEKRK +YEK +KAYNKK
Sbjct: 428 DFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL 487
Query: 419 AEGPAAADEEESEKSVSEVNDQDEDDDDSDE 327
EGP ++EES+KSVSEVND+D+ +D S+E
Sbjct: 488 EEGP--KEDEESDKSVSEVNDEDDAEDGSEE 516
>sp|P40620|HMGL_VICFA HMG1/2-like protein gi|541981|pir||S39556 high mobility group
protein HMG - fava bean
Length = 149
Score = 184 bits (468), Expect = 1e-45
Identities = 95/152 (62%), Positives = 119/152 (77%), Gaps = 1/152 (0%)
Frame = -2
Query: 767 MKGGKSRTESKRAEPKLAVNKKAGGATKPARG-AKGKAATDPNKPERPPSAFFVCMEDFR 591
MKGGKS+ ESK+AE KLAVNKK ATK + AKGK DPNKP+RPPSAFFV M DFR
Sbjct: 1 MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60
Query: 590 KIFNKENPENKAVSAVGKAAGAKWKSMSEAEKAPYVAKAEKRKADYEKTMKAYNKKQAEG 411
+ + K++P NK+V+AVGKA G +WKS+SE EKAPYV +A K+K +YE T++AYNKK EG
Sbjct: 61 EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK-LEG 119
Query: 410 PAAADEEESEKSVSEVNDQDEDDDDSDEDDDD 315
DEE S+KS SEVND+DED++D +++DDD
Sbjct: 120 --KDDEEGSDKSKSEVNDEDEDEEDEEDEDDD 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 713,859,802
Number of Sequences: 1393205
Number of extensions: 16798197
Number of successful extensions: 242413
Number of sequences better than 10.0: 3523
Number of HSP's better than 10.0 without gapping: 99799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166335
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 42922608498
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
