Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002649A_C01 KMC002649A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52091.1|AC012680_2 putative AP2 domain transcriptional reg... 64 2e-09
ref|NP_177931.1| AP2 domain protein RAP2.4; protein id: At1g7808... 64 2e-09
gb|AAK43967.1|AF370152_1 putative AP2 domain-containing protein ... 64 2e-09
gb|AAF17691.1|AC009243_18 F28K19.29 [Arabidopsis thaliana] 64 2e-09
gb|AAC49770.1| AP2 domain containing protein RAP2.4 [Arabidopsis... 64 2e-09
>gb|AAG52091.1|AC012680_2 putative AP2 domain transcriptional regulator, 5' partial; 1-558
[Arabidopsis thaliana]
Length = 185
Score = 63.9 bits (154), Expect = 2e-09
Identities = 40/71 (56%), Positives = 47/71 (65%), Gaps = 2/71 (2%)
Frame = -3
Query: 614 LKKQAQAEVENKVEASLSPVVTESENSD-DSSPLSDLTFGDFSEP-QWDATTSEYLNLQK 441
L ++ +AE EN V SP VTE E S SSPLSDLTF D EP QW+ T S L+K
Sbjct: 118 LSEKVKAE-ENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWNETFS----LEK 172
Query: 440 FPSYEIDWDSL 408
+PSYEIDWDS+
Sbjct: 173 YPSYEIDWDSI 183
>ref|NP_177931.1| AP2 domain protein RAP2.4; protein id: At1g78080.1, supported by
cDNA: gi_13877778 [Arabidopsis thaliana]
gi|23297619|gb|AAN12993.1| putative AP2 domain
containing protein [Arabidopsis thaliana]
Length = 334
Score = 63.9 bits (154), Expect = 2e-09
Identities = 40/71 (56%), Positives = 47/71 (65%), Gaps = 2/71 (2%)
Frame = -3
Query: 614 LKKQAQAEVENKVEASLSPVVTESENSD-DSSPLSDLTFGDFSEP-QWDATTSEYLNLQK 441
L ++ +AE EN V SP VTE E S SSPLSDLTF D EP QW+ T S L+K
Sbjct: 267 LSEKVKAE-ENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWNETFS----LEK 321
Query: 440 FPSYEIDWDSL 408
+PSYEIDWDS+
Sbjct: 322 YPSYEIDWDSI 332
>gb|AAK43967.1|AF370152_1 putative AP2 domain-containing protein [Arabidopsis thaliana]
Length = 334
Score = 63.9 bits (154), Expect = 2e-09
Identities = 40/71 (56%), Positives = 47/71 (65%), Gaps = 2/71 (2%)
Frame = -3
Query: 614 LKKQAQAEVENKVEASLSPVVTESENSD-DSSPLSDLTFGDFSEP-QWDATTSEYLNLQK 441
L ++ +AE EN V SP VTE E S SSPLSDLTF D EP QW+ T S L+K
Sbjct: 267 LSEKVKAE-ENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWNETFS----LEK 321
Query: 440 FPSYEIDWDSL 408
+PSYEIDWDS+
Sbjct: 322 YPSYEIDWDSI 332
>gb|AAF17691.1|AC009243_18 F28K19.29 [Arabidopsis thaliana]
Length = 330
Score = 63.9 bits (154), Expect = 2e-09
Identities = 40/71 (56%), Positives = 47/71 (65%), Gaps = 2/71 (2%)
Frame = -3
Query: 614 LKKQAQAEVENKVEASLSPVVTESENSD-DSSPLSDLTFGDFSEP-QWDATTSEYLNLQK 441
L ++ +AE EN V SP VTE E S SSPLSDLTF D EP QW+ T S L+K
Sbjct: 263 LSEKVKAE-ENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWNETFS----LEK 317
Query: 440 FPSYEIDWDSL 408
+PSYEIDWDS+
Sbjct: 318 YPSYEIDWDSI 328
>gb|AAC49770.1| AP2 domain containing protein RAP2.4 [Arabidopsis thaliana]
Length = 229
Score = 63.9 bits (154), Expect = 2e-09
Identities = 40/71 (56%), Positives = 47/71 (65%), Gaps = 2/71 (2%)
Frame = -3
Query: 614 LKKQAQAEVENKVEASLSPVVTESENSD-DSSPLSDLTFGDFSEP-QWDATTSEYLNLQK 441
L ++ +AE EN V SP VTE E S SSPLSDLTF D EP QW+ T S L+K
Sbjct: 162 LSEKVKAE-ENSVSIGGSPPVTEFEESTAGSSPLSDLTFADPEEPPQWNETFS----LEK 216
Query: 440 FPSYEIDWDSL 408
+PSYEIDWDS+
Sbjct: 217 YPSYEIDWDSI 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,625,080
Number of Sequences: 1393205
Number of extensions: 10580463
Number of successful extensions: 35212
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 32891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35051
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
