Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002646A_C01 KMC002646A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568206.1| Expressed protein; protein id: At5g08750.1, sup... 171 6e-42
gb|AAL14416.1| AT5g63780/MBK5_26 [Arabidopsis thaliana] 171 6e-42
gb|AAO00881.1| putative protein [Arabidopsis thaliana] 169 2e-41
ref|NP_201183.1| putative protein; protein id: At5g63780.1 [Arab... 89 4e-17
pir||S61982 probable membrane protein YOL002c - yeast (Saccharom... 34 1.2
>ref|NP_568206.1| Expressed protein; protein id: At5g08750.1, supported by cDNA:
gi_16209721 [Arabidopsis thaliana]
gi|13548333|emb|CAC35880.1| putative protein
[Arabidopsis thaliana] gi|26451043|dbj|BAC42627.1|
unknown protein [Arabidopsis thaliana]
Length = 363
Score = 171 bits (432), Expect = 6e-42
Identities = 76/90 (84%), Positives = 89/90 (98%)
Frame = -2
Query: 530 KWAVEGTGILLATGLLTITLAWLIAPRLGKKTARAGLHILLGGVCALTVMVFFRFFVLTR 351
KWAVEGTGILLATGLLT+TLAWLIAPR+GK+TA++GLHILLGG+CALTV++FFRF VLTR
Sbjct: 270 KWAVEGTGILLATGLLTVTLAWLIAPRVGKRTAKSGLHILLGGLCALTVVIFFRFVVLTR 329
Query: 350 IKYGPARYWAILFIFWFLVFGIWASRTHSA 261
I+YGPARYWAILF+FWFLVFGIWASR+H++
Sbjct: 330 IRYGPARYWAILFVFWFLVFGIWASRSHAS 359
>gb|AAL14416.1| AT5g63780/MBK5_26 [Arabidopsis thaliana]
Length = 363
Score = 171 bits (432), Expect = 6e-42
Identities = 76/90 (84%), Positives = 89/90 (98%)
Frame = -2
Query: 530 KWAVEGTGILLATGLLTITLAWLIAPRLGKKTARAGLHILLGGVCALTVMVFFRFFVLTR 351
KWAVEGTGILLATGLLT+TLAWLIAPR+GK+TA++GLHILLGG+CALTV++FFRF VLTR
Sbjct: 270 KWAVEGTGILLATGLLTVTLAWLIAPRVGKRTAKSGLHILLGGLCALTVVIFFRFVVLTR 329
Query: 350 IKYGPARYWAILFIFWFLVFGIWASRTHSA 261
I+YGPARYWAILF+FWFLVFGIWASR+H++
Sbjct: 330 IRYGPARYWAILFVFWFLVFGIWASRSHAS 359
>gb|AAO00881.1| putative protein [Arabidopsis thaliana]
Length = 367
Score = 169 bits (427), Expect = 2e-41
Identities = 76/90 (84%), Positives = 88/90 (97%)
Frame = -2
Query: 530 KWAVEGTGILLATGLLTITLAWLIAPRLGKKTARAGLHILLGGVCALTVMVFFRFFVLTR 351
KWAVEGTGILLATGLLT+TL WLIAPR+GKKTAR+GLHILLGG+CALT+++FFRF VLTR
Sbjct: 274 KWAVEGTGILLATGLLTVTLVWLIAPRVGKKTARSGLHILLGGLCALTIVIFFRFVVLTR 333
Query: 350 IKYGPARYWAILFIFWFLVFGIWASRTHSA 261
I+YGPARYWAILFIFWFLVFGIWASR++++
Sbjct: 334 IRYGPARYWAILFIFWFLVFGIWASRSNAS 363
>ref|NP_201183.1| putative protein; protein id: At5g63780.1 [Arabidopsis thaliana]
gi|10177059|dbj|BAB10471.1|
gb|AAD32776.1~gene_id:MBK5.26~similar to unknown protein
[Arabidopsis thaliana]
Length = 365
Score = 88.6 bits (218), Expect = 4e-17
Identities = 47/86 (54%), Positives = 54/86 (62%), Gaps = 31/86 (36%)
Frame = -2
Query: 530 KWAVEGTGILLATGLLTITLAWLIAPRLGK------------------------------ 441
KWAVEGTGILLATGLLT+TL WLIAPR+GK
Sbjct: 274 KWAVEGTGILLATGLLTVTLVWLIAPRVGKVCHRSNLVYLSLSDWYIDNVYLVNGCFEFV 333
Query: 440 -KTARAGLHILLGGVCALTVMVFFRF 366
KTAR+GLHILLGG+CALT+++FFRF
Sbjct: 334 QKTARSGLHILLGGLCALTIVIFFRF 359
>pir||S61982 probable membrane protein YOL002c - yeast (Saccharomyces
cerevisiae) gi|1150994|gb|AAC49478.1| hypothetical
protein UND327 gi|1419763|emb|CAA99001.1| ORF YOL002c
[Saccharomyces cerevisiae]
Length = 327
Score = 33.9 bits (76), Expect = 1.2
Identities = 16/67 (23%), Positives = 31/67 (45%), Gaps = 9/67 (13%)
Frame = -1
Query: 432 KSWSSYPTWRCLCFNSDGFLPLF----CAHQNQVWT-----CTILGNLVHFLVSCLWNMG 280
+ W Y +CF +P+F C +++WT +LG +++ + + L+ M
Sbjct: 216 REWRPYRAGLFVCFGLSSIIPIFSGLYCYSFSEIWTQIQLFWVLLGGVLYIIGAVLYGMR 275
Query: 279 FSDAQCP 259
F + CP
Sbjct: 276 FPEKICP 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,776,379
Number of Sequences: 1393205
Number of extensions: 10387215
Number of successful extensions: 38677
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 34057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38647
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
