Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002645A_C02 KMC002645A_c02
(705 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194942.1| synaptobrevin-like protein; protein id: At4g321... 114 1e-24
ref|NP_196676.1| putative protein; protein id: At5g11150.1, supp... 114 2e-24
ref|NP_180106.1| putative synaptobrevin; protein id: At2g25340.1... 110 2e-23
dbj|BAA95814.1| ESTs AU082579(S2069),D40238(S2069) correspond to... 105 6e-22
ref|NP_197628.1| synaptobrevin-like protein; protein id: At5g223... 71 1e-11
>ref|NP_194942.1| synaptobrevin-like protein; protein id: At4g32150.1, supported by
cDNA: 41543., supported by cDNA: gi_16612291
[Arabidopsis thaliana] gi|27805754|sp|O49377|V711_ARATH
Vesicle-associated membrane protein 711 (AtVAMP711)
(v-SNARE synaptobrevin 7C) (AtVAMP7C)
gi|7488359|pir||T04630 synaptobrevin homolog F10N7.40 -
Arabidopsis thaliana gi|3858935|emb|CAA16574.1|
synaptobrevin-like protein [Arabidopsis thaliana]
gi|4103357|gb|AAD01748.1| vesicle-associated membrane
protein 7C; synaptobrevin 7C [Arabidopsis thaliana]
gi|7270119|emb|CAB79933.1| synaptobrevin-like protein
[Arabidopsis thaliana]
gi|16612292|gb|AAL27509.1|AF439840_1 AT4g32150/F10N7_40
[Arabidopsis thaliana] gi|21593706|gb|AAM65673.1|
synaptobrevin-like protein [Arabidopsis thaliana]
gi|21928069|gb|AAM78063.1| AT4g32150/F10N7_40
[Arabidopsis thaliana]
Length = 219
Score = 114 bits (286), Expect = 1e-24
Identities = 51/62 (82%), Positives = 57/62 (91%)
Frame = -1
Query: 705 LLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTIALILIILVIIYVVLAFVCHGPALP 526
LLVDKTANMQGNTFRFRKQARRFRS VWWRN KLT+ LIL++LVIIY+ +AF+CHGP LP
Sbjct: 157 LLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHGPTLP 216
Query: 525 SC 520
SC
Sbjct: 217 SC 218
>ref|NP_196676.1| putative protein; protein id: At5g11150.1, supported by cDNA:
gi_20259406 [Arabidopsis thaliana]
gi|27805763|sp|Q9LFP1|V713_ARATH Vesicle-associated
membrane protein 713 (AtVAMP713)
gi|8953377|emb|CAB96650.1| putative protein [Arabidopsis
thaliana] gi|20259407|gb|AAM14024.1| unknown protein
[Arabidopsis thaliana] gi|21689691|gb|AAM67467.1|
unknown protein [Arabidopsis thaliana]
Length = 221
Score = 114 bits (284), Expect = 2e-24
Identities = 48/63 (76%), Positives = 59/63 (93%)
Frame = -1
Query: 705 LLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTIALILIILVIIYVVLAFVCHGPALP 526
LLVDKT NMQGNTFRFRKQARR+R+ +WWRNVKLTIALIL++ +++Y+ +AFVCHGP+LP
Sbjct: 158 LLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHGPSLP 217
Query: 525 SCF 517
SCF
Sbjct: 218 SCF 220
>ref|NP_180106.1| putative synaptobrevin; protein id: At2g25340.1 [Arabidopsis
thaliana] gi|27805766|sp|Q9SIQ9|V712_ARATH
Vesicle-associated membrane protein 712 (AtVAMP712)
gi|25412302|pir||C84647 probable synaptobrevin
[imported] - Arabidopsis thaliana
gi|4567243|gb|AAD23657.1| putative synaptobrevin
[Arabidopsis thaliana]
Length = 219
Score = 110 bits (275), Expect = 2e-23
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = -1
Query: 705 LLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTIALILIILVIIYVVLAFVCHGPALP 526
LLVDKTANMQGNTFRFRKQ RRF +TVWWRN KLT+ LIL++LVIIY+ +AF CHGP LP
Sbjct: 157 LLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHGPTLP 216
Query: 525 SC 520
SC
Sbjct: 217 SC 218
>dbj|BAA95814.1| ESTs AU082579(S2069),D40238(S2069) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana
vesicle-associated membrane protein 7C; synaptobrevin
7C. (AF025332) [Oryza sativa (japonica cultivar-group)]
Length = 221
Score = 105 bits (262), Expect = 6e-22
Identities = 47/62 (75%), Positives = 55/62 (87%)
Frame = -1
Query: 705 LLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTIALILIILVIIYVVLAFVCHGPALP 526
+LVDKTANMQGNT RF++QARRFR+T WWRNVKLTIALI ++ VIIYVVL F+CHG LP
Sbjct: 158 MLVDKTANMQGNTIRFKRQARRFRNTTWWRNVKLTIALIFLLTVIIYVVLVFMCHGFTLP 217
Query: 525 SC 520
+C
Sbjct: 218 TC 219
>ref|NP_197628.1| synaptobrevin-like protein; protein id: At5g22360.1 [Arabidopsis
thaliana] gi|27805762|sp|Q9FMR5|V714_ARATH
Vesicle-associated membrane protein 714 (AtVAMP714)
gi|9757817|dbj|BAB08335.1| synaptobrevin-like protein
[Arabidopsis thaliana]
Length = 221
Score = 71.2 bits (173), Expect = 1e-11
Identities = 30/62 (48%), Positives = 44/62 (70%)
Frame = -1
Query: 705 LLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTIALILIILVIIYVVLAFVCHGPALP 526
LLVDKTA MQ ++F FRKQ++R R +W +N KL + L +I+ ++Y+++A C G LP
Sbjct: 158 LLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYIIIASFCGGITLP 217
Query: 525 SC 520
SC
Sbjct: 218 SC 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 603,300,096
Number of Sequences: 1393205
Number of extensions: 13004245
Number of successful extensions: 35365
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 33416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35280
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
