Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002639A_C01 KMC002639A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181046.1| thioredoxin, putative; protein id: At2g35010.1 ... 122 2e-27
dbj|BAC43652.1| putative thioredoxin [Arabidopsis thaliana] 121 7e-27
gb|AAF98203.1|AC000107_26 F17F8.6 [Arabidopsis thaliana] 111 5e-24
ref|NP_564371.1| expressed protein; protein id: At1g31020.1, sup... 111 5e-24
gb|AAL54858.1| tetratricoredoxin [Nicotiana tabacum] 82 6e-15
>ref|NP_181046.1| thioredoxin, putative; protein id: At2g35010.1 [Arabidopsis
thaliana] gi|7485808|pir||T00482 probable thioredoxin
At2g35010 [imported] - Arabidopsis thaliana
gi|3033396|gb|AAC12840.1| putative thioredoxin
[Arabidopsis thaliana]
Length = 194
Score = 122 bits (307), Expect = 2e-27
Identities = 53/91 (58%), Positives = 71/91 (77%)
Frame = -1
Query: 561 DNSLHAIIYFTAVWCGPCQFISPIVGELSKKYPHVTTYKIDIDQEALRGTLTKLQISSVP 382
D SL ++ YFTA WCGPC+FISP++ ELSK+YP VTTYK+DID+ + T++KL I++VP
Sbjct: 104 DGSLPSVFYFTAAWCGPCRFISPVIVELSKQYPDVTTYKVDIDEGGISNTISKLNITAVP 163
Query: 381 TLHFFLNGKKADELVGADVAKLNRITEKLFQ 289
TLHFF G K E+VGADV KL + E+L++
Sbjct: 164 TLHFFKGGSKKGEVVGADVTKLKNLMEQLYK 194
>dbj|BAC43652.1| putative thioredoxin [Arabidopsis thaliana]
Length = 96
Score = 121 bits (303), Expect = 7e-27
Identities = 53/91 (58%), Positives = 70/91 (76%)
Frame = -1
Query: 561 DNSLHAIIYFTAVWCGPCQFISPIVGELSKKYPHVTTYKIDIDQEALRGTLTKLQISSVP 382
D SL + YFTA WCGPC+FISP++ ELSK+YP VTTYK+DID+ + T++KL I++VP
Sbjct: 6 DGSLPSAFYFTAAWCGPCRFISPVIVELSKQYPDVTTYKVDIDEGGISNTISKLNITAVP 65
Query: 381 TLHFFLNGKKADELVGADVAKLNRITEKLFQ 289
TLHFF G K E+VGADV KL + E+L++
Sbjct: 66 TLHFFKGGSKKGEVVGADVTKLKNLMEQLYK 96
>gb|AAF98203.1|AC000107_26 F17F8.6 [Arabidopsis thaliana]
Length = 153
Score = 111 bits (278), Expect = 5e-24
Identities = 49/91 (53%), Positives = 65/91 (70%)
Frame = -1
Query: 561 DNSLHAIIYFTAVWCGPCQFISPIVGELSKKYPHVTTYKIDIDQEALRGTLTKLQISSVP 382
D SL ++ YFTA WCGPC+ ISP++ ELS KYP VTTYK+DID+ L + KL +S+VP
Sbjct: 63 DGSLPSVFYFTAAWCGPCRLISPVILELSNKYPDVTTYKVDIDEGGLSNAIGKLNVSAVP 122
Query: 381 TLHFFLNGKKADELVGADVAKLNRITEKLFQ 289
TL FF G K E+VG DV +L + E+L++
Sbjct: 123 TLQFFKGGVKKAEIVGVDVVRLKSVMEQLYK 153
>ref|NP_564371.1| expressed protein; protein id: At1g31020.1, supported by cDNA:
gi_15081458, supported by cDNA: gi_15215811, supported
by cDNA: gi_20147404 [Arabidopsis thaliana]
gi|15081459|gb|AAK83918.1| thioredoxin o [Arabidopsis
thaliana] gi|15215812|gb|AAK91451.1| At1g31020/F17F8_6
[Arabidopsis thaliana] gi|20147405|gb|AAM10412.1|
At2g20920/F5H14.11 [Arabidopsis thaliana]
Length = 159
Score = 111 bits (278), Expect = 5e-24
Identities = 49/91 (53%), Positives = 65/91 (70%)
Frame = -1
Query: 561 DNSLHAIIYFTAVWCGPCQFISPIVGELSKKYPHVTTYKIDIDQEALRGTLTKLQISSVP 382
D SL ++ YFTA WCGPC+ ISP++ ELS KYP VTTYK+DID+ L + KL +S+VP
Sbjct: 69 DGSLPSVFYFTAAWCGPCRLISPVILELSNKYPDVTTYKVDIDEGGLSNAIGKLNVSAVP 128
Query: 381 TLHFFLNGKKADELVGADVAKLNRITEKLFQ 289
TL FF G K E+VG DV +L + E+L++
Sbjct: 129 TLQFFKGGVKKAEIVGVDVVRLKSVMEQLYK 159
>gb|AAL54858.1| tetratricoredoxin [Nicotiana tabacum]
Length = 386
Score = 81.6 bits (200), Expect = 6e-15
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = -1
Query: 546 AIIYFTAVWCGPCQFISPIVGELSKKYPHVTTYKIDIDQEALRGTLTKLQISSVPTLHFF 367
AI+YFTA WCGPC+FISP+ L++KYP K DID+ R ++ +SSVP F
Sbjct: 303 AILYFTATWCGPCRFISPVFTSLAEKYPKAAFLKADIDE--ARDAASRWNVSSVPAFFFI 360
Query: 366 LNGKKADELVGADVAKLNRITEKLFQ 289
NGK+ D +VGAD N + +K+ Q
Sbjct: 361 KNGKEVDRVVGAD---KNLLEKKIVQ 383
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,813,902
Number of Sequences: 1393205
Number of extensions: 9769467
Number of successful extensions: 26705
Number of sequences better than 10.0: 878
Number of HSP's better than 10.0 without gapping: 25458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26282
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
