Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002638A_C01 KMC002638A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172736.1| unknown protein; protein id: At1g12760.1 [Arabi... 125 2e-28
gb|AAF88088.1|AC025417_16 T12C24.29 [Arabidopsis thaliana] gi|22... 125 2e-28
ref|NP_564810.1| expressed protein; protein id: At1g63170.1, sup... 120 5e-27
gb|AAM63303.1| unknown [Arabidopsis thaliana] 120 5e-27
gb|AAO72540.1| ring zinc finger protein-like protein [Oryza sati... 119 1e-26
>ref|NP_172736.1| unknown protein; protein id: At1g12760.1 [Arabidopsis thaliana]
Length = 368
Score = 125 bits (315), Expect = 2e-28
Identities = 52/61 (85%), Positives = 57/61 (93%)
Frame = -3
Query: 451 EEDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNILKSSNVGEEE 272
+EDAECCICLS+Y+DG ELRELPCGHHFHC CVDKWL+INATCPLCKYNILKSSN+ EE
Sbjct: 308 QEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLDREE 367
Query: 271 V 269
V
Sbjct: 368 V 368
>gb|AAF88088.1|AC025417_16 T12C24.29 [Arabidopsis thaliana] gi|22531064|gb|AAM97036.1| unknown
protein [Arabidopsis thaliana]
gi|23198142|gb|AAN15598.1| unknown protein [Arabidopsis
thaliana]
Length = 408
Score = 125 bits (315), Expect = 2e-28
Identities = 52/61 (85%), Positives = 57/61 (93%)
Frame = -3
Query: 451 EEDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNILKSSNVGEEE 272
+EDAECCICLS+Y+DG ELRELPCGHHFHC CVDKWL+INATCPLCKYNILKSSN+ EE
Sbjct: 348 QEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLDREE 407
Query: 271 V 269
V
Sbjct: 408 V 408
>ref|NP_564810.1| expressed protein; protein id: At1g63170.1, supported by cDNA:
21249., supported by cDNA: gi_16604387 [Arabidopsis
thaliana] gi|25404410|pir||C96657 hypothetical protein
F16M19.7 [imported] - Arabidopsis thaliana
gi|12323245|gb|AAG51597.1|AC010795_1 hypothetical
protein; 76801-78300 [Arabidopsis thaliana]
Length = 381
Score = 120 bits (302), Expect = 5e-27
Identities = 51/59 (86%), Positives = 54/59 (91%)
Frame = -3
Query: 448 EDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNILKSSNVGEEE 272
EDAECCICLS+Y+D ELRELPCGHHFHCGCVDKWL+INATCPLCKYNILKSSN E E
Sbjct: 321 EDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGE 379
>gb|AAM63303.1| unknown [Arabidopsis thaliana]
Length = 381
Score = 120 bits (302), Expect = 5e-27
Identities = 51/59 (86%), Positives = 54/59 (91%)
Frame = -3
Query: 448 EDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNILKSSNVGEEE 272
EDAECCICLS+Y+D ELRELPCGHHFHCGCVDKWL+INATCPLCKYNILKSSN E E
Sbjct: 321 EDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYEEGE 379
>gb|AAO72540.1| ring zinc finger protein-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 250
Score = 119 bits (299), Expect = 1e-26
Identities = 51/61 (83%), Positives = 55/61 (89%), Gaps = 1/61 (1%)
Frame = -3
Query: 448 EDAECCICLSSYDDGVELRELPCGHHFHCGCVDKWLHINATCPLCKYNILKS-SNVGEEE 272
EDAECCICLS+YDDG ELRELPCGHHFHC C+DKWLHINATCPLCK+NI KS S+ G EE
Sbjct: 190 EDAECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKFNIRKSGSSSGSEE 249
Query: 271 V 269
V
Sbjct: 250 V 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,356,681
Number of Sequences: 1393205
Number of extensions: 8531160
Number of successful extensions: 23817
Number of sequences better than 10.0: 1337
Number of HSP's better than 10.0 without gapping: 22780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23548
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
