Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002637A_C02 KMC002637A_c02
(666 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB07966.1| putative t-SNARE SED5 [Oryza sativa (japonica cu... 165 6e-40
sp|Q9LK09|SY32_ARATH Syntaxin 32 (AtSYP32) gi|11994697|dbj|BAB02... 150 1e-35
ref|NP_189078.1| syntaxin SYP32; protein id: At3g24350.1 [Arabid... 150 1e-35
gb|AAC06291.1| syntaxin of plants 31 [Arabidopsis thaliana] 126 2e-28
ref|NP_196195.1| syntaxin SYP31; protein id: At5g05760.1, suppor... 126 2e-28
>dbj|BAB07966.1| putative t-SNARE SED5 [Oryza sativa (japonica cultivar-group)]
gi|15289779|dbj|BAB63479.1| putative t-SNARE SED5 [Oryza
sativa (japonica cultivar-group)]
Length = 344
Score = 165 bits (417), Expect = 6e-40
Identities = 82/93 (88%), Positives = 89/93 (95%)
Frame = -1
Query: 666 DSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGAL 487
DSYMQSRAEALQNVESTIHELSNIF QLAT+VSQQGE+AIRIDENMDDTLANVEGAQG L
Sbjct: 252 DSYMQSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQL 311
Query: 486 LKYMNSISSNRWLMIKIFFVLIFFLTVFLFFVA 388
LKY+NSISSNRWLM+KIFFVL+ FL +F+FFVA
Sbjct: 312 LKYLNSISSNRWLMMKIFFVLMVFLMIFIFFVA 344
>sp|Q9LK09|SY32_ARATH Syntaxin 32 (AtSYP32) gi|11994697|dbj|BAB02935.1| probable t-SNARE
(soluble NSF attachment protein receptor) SED5; ER to
Golgi transport [Arabidopsis thaliana]
gi|28393777|gb|AAO42298.1| putative syntaxin SYP32
[Arabidopsis thaliana]
Length = 347
Score = 150 bits (379), Expect = 1e-35
Identities = 74/93 (79%), Positives = 84/93 (89%)
Frame = -1
Query: 666 DSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGAL 487
D+YMQ RAEAL VESTIHELS+IF QLAT+VSQQGE+AIRID+NM+DTLANVEGAQ L
Sbjct: 255 DTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQL 314
Query: 486 LKYMNSISSNRWLMIKIFFVLIFFLTVFLFFVA 388
+Y+NSISSNRWLM+KIFFVLI FL +FLFFVA
Sbjct: 315 ARYLNSISSNRWLMMKIFFVLIAFLMIFLFFVA 347
>ref|NP_189078.1| syntaxin SYP32; protein id: At3g24350.1 [Arabidopsis thaliana]
Length = 377
Score = 150 bits (379), Expect = 1e-35
Identities = 74/93 (79%), Positives = 84/93 (89%)
Frame = -1
Query: 666 DSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGAL 487
D+YMQ RAEAL VESTIHELS+IF QLAT+VSQQGE+AIRID+NM+DTLANVEGAQ L
Sbjct: 285 DTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQL 344
Query: 486 LKYMNSISSNRWLMIKIFFVLIFFLTVFLFFVA 388
+Y+NSISSNRWLM+KIFFVLI FL +FLFFVA
Sbjct: 345 ARYLNSISSNRWLMMKIFFVLIAFLMIFLFFVA 377
>gb|AAC06291.1| syntaxin of plants 31 [Arabidopsis thaliana]
Length = 336
Score = 126 bits (317), Expect = 2e-28
Identities = 64/93 (68%), Positives = 79/93 (84%)
Frame = -1
Query: 666 DSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGAL 487
++Y QSRA AL +VES I ELS IF QLAT+V+QQGE+AIRID+NMD++L NVEGA+ AL
Sbjct: 244 ENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSAL 303
Query: 486 LKYMNSISSNRWLMIKIFFVLIFFLTVFLFFVA 388
L+++ ISSNRWLM+KIF V+I FL VFLFFVA
Sbjct: 304 LQHLTRISSNRWLMMKIFAVIILFLIVFLFFVA 336
>ref|NP_196195.1| syntaxin SYP31; protein id: At5g05760.1, supported by cDNA:
gi_15809833, supported by cDNA: gi_17978872, supported
by cDNA: gi_2981438 [Arabidopsis thaliana]
gi|28380162|sp|Q9FFK1|SY31_ARATH Syntaxin 31 (AtSYP31)
(AtSED5) gi|9759101|dbj|BAB09670.1| t-SNARE SED5
[Arabidopsis thaliana] gi|15809834|gb|AAL06845.1|
AT5g05760/MJJ3_17 [Arabidopsis thaliana]
gi|17978873|gb|AAL47408.1| AT5g05760/MJJ3_17
[Arabidopsis thaliana]
Length = 336
Score = 126 bits (317), Expect = 2e-28
Identities = 64/93 (68%), Positives = 79/93 (84%)
Frame = -1
Query: 666 DSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGAL 487
++Y QSRA AL +VES I ELS IF QLAT+V+QQGE+AIRID+NMD++L NVEGA+ AL
Sbjct: 244 ENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSAL 303
Query: 486 LKYMNSISSNRWLMIKIFFVLIFFLTVFLFFVA 388
L+++ ISSNRWLM+KIF V+I FL VFLFFVA
Sbjct: 304 LQHLTRISSNRWLMMKIFAVIILFLIVFLFFVA 336
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,531,340
Number of Sequences: 1393205
Number of extensions: 11192136
Number of successful extensions: 28573
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 27363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28557
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
