Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002636A_C01 KMC002636A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62684.1| lipoic acid synthase-like protein [Arabidopsis th... 75 3e-13
ref|NP_568196.1| lipoic acid synthase - like protein; protein id... 75 3e-13
dbj|BAB56059.1| putative lipoic acid synthase-like protein [Oryz... 72 4e-12
ref|NP_595577.1| putative lipoic acid synthetase, mitochondrial;... 58 6e-08
dbj|BAA21430.1| LIPOIC ACID SYNTHETASE PRECURSOR(LIP-SYN) [Schiz... 58 6e-08
>gb|AAM62684.1| lipoic acid synthase-like protein [Arabidopsis thaliana]
Length = 393
Score = 75.5 bits (184), Expect = 3e-13
Identities = 35/37 (94%), Positives = 36/37 (96%)
Frame = -3
Query: 511 FWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVRE 401
FWK YGESIGFRYVASGPLVRSSYRAGELFVKTMV+E
Sbjct: 350 FWKTYGESIGFRYVASGPLVRSSYRAGELFVKTMVKE 386
>ref|NP_568196.1| lipoic acid synthase - like protein; protein id: At5g08415.1,
supported by cDNA: 152427., supported by cDNA:
gi_20373022 [Arabidopsis thaliana]
gi|20373023|dbj|BAB91180.1| lipoic acid synthase
[Arabidopsis thaliana]
Length = 394
Score = 75.5 bits (184), Expect = 3e-13
Identities = 35/37 (94%), Positives = 36/37 (96%)
Frame = -3
Query: 511 FWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVRE 401
FWK YGESIGFRYVASGPLVRSSYRAGELFVKTMV+E
Sbjct: 351 FWKTYGESIGFRYVASGPLVRSSYRAGELFVKTMVKE 387
>dbj|BAB56059.1| putative lipoic acid synthase-like protein [Oryza sativa (japonica
cultivar-group)] gi|21743314|dbj|BAC03309.1| putative
lipoic acid synthase-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 365
Score = 72.0 bits (175), Expect = 4e-12
Identities = 32/36 (88%), Positives = 35/36 (96%)
Frame = -3
Query: 511 FWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVR 404
FWKEYGES+GFRYVASGPLVRSSYRAGELFV+ +VR
Sbjct: 320 FWKEYGESVGFRYVASGPLVRSSYRAGELFVQNLVR 355
>ref|NP_595577.1| putative lipoic acid synthetase, mitochondrial; similar to S.
cerevisiae LIP5 [Schizosaccharomyces pombe]
gi|6166564|sp|O13642|LIPA_SCHPO Probable lipoic acid
synthetase, mitochondrial precursor (Lip-syn) (Lipoate
synthetase) gi|7492139|pir||T40760 lipoic acid
synthetase - fission yeast (Schizosaccharomyces pombe)
gi|2950502|emb|CAA17830.1| putative lipoic acid
synthetase, mitochondrial; similar to S. cerevisiae LIP5
[Schizosaccharomyces pombe]
Length = 370
Score = 58.2 bits (139), Expect = 6e-08
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = -3
Query: 511 FWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVREKTQN 389
+WKE E +GF YVASGPLVRSSY+AGE F++ ++++++ N
Sbjct: 324 YWKEVAEKLGFLYVASGPLVRSSYKAGEYFMENLIKKRSGN 364
>dbj|BAA21430.1| LIPOIC ACID SYNTHETASE PRECURSOR(LIP-SYN) [Schizosaccharomyces
pombe]
Length = 277
Score = 58.2 bits (139), Expect = 6e-08
Identities = 23/41 (56%), Positives = 34/41 (82%)
Frame = -3
Query: 511 FWKEYGESIGFRYVASGPLVRSSYRAGELFVKTMVREKTQN 389
+WKE E +GF YVASGPLVRSSY+AGE F++ ++++++ N
Sbjct: 231 YWKEVAEKLGFLYVASGPLVRSSYKAGEYFMENLIKKRSGN 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,810,265
Number of Sequences: 1393205
Number of extensions: 8531269
Number of successful extensions: 17764
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 17181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17763
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
