Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002631A_C01 KMC002631A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_644182.1| DNA primase [Xanthomonas axonopodis pv. citri s... 32 5.8
>ref|NP_644182.1| DNA primase [Xanthomonas axonopodis pv. citri str. 306]
gi|21110280|gb|AAM38718.1| DNA primase [Xanthomonas
axonopodis pv. citri str. 306]
Length = 582
Score = 31.6 bits (70), Expect = 5.8
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 475 DEIHKRKGQDLPCSERRDERLGFQKPPDPDQFYASLDAAKDIIMCQIQESG 323
DE+ KR G D+P R ++ Q+ D + Y++L+AA Q++ SG
Sbjct: 86 DELAKRAGMDIP---RETQQRTPQQQDDSRELYSALEAATKFFQRQLEGSG 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,605,034
Number of Sequences: 1393205
Number of extensions: 9549361
Number of successful extensions: 20131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20127
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
