Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002629A_C01 KMC002629A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188841.1| hypothetical protein; protein id: At3g22030.1 [... 50 1e-05
dbj|BAB01386.1| emb|CAB45834.1~gene_id:MZN24.21~similar to unkno... 50 1e-05
ref|NP_188830.1| pollen coat receptor kinase, putative; protein ... 48 6e-05
ref|NP_188831.1| receptor kinase, putative; protein id: At3g2193... 46 2e-04
dbj|BAB01370.1| contains similarity to receptor protein kinase~g... 46 2e-04
>ref|NP_188841.1| hypothetical protein; protein id: At3g22030.1 [Arabidopsis
thaliana]
Length = 253
Score = 50.1 bits (118), Expect = 1e-05
Identities = 21/39 (53%), Positives = 26/39 (65%)
Frame = -2
Query: 466 CSDCLERSLYYAKECGRGKEGVRVYSGICRLRYDMYPFL 350
C DCLE S+ +C GK+G RV IC LRY++YPFL
Sbjct: 213 CKDCLEWSIKELSKCCDGKQGARVVGTICNLRYELYPFL 251
>dbj|BAB01386.1| emb|CAB45834.1~gene_id:MZN24.21~similar to unknown protein
[Arabidopsis thaliana]
Length = 218
Score = 50.1 bits (118), Expect = 1e-05
Identities = 21/39 (53%), Positives = 26/39 (65%)
Frame = -2
Query: 466 CSDCLERSLYYAKECGRGKEGVRVYSGICRLRYDMYPFL 350
C DCLE S+ +C GK+G RV IC LRY++YPFL
Sbjct: 178 CKDCLEWSIKELSKCCDGKQGARVVGTICNLRYELYPFL 216
>ref|NP_188830.1| pollen coat receptor kinase, putative; protein id: At3g21920.1
[Arabidopsis thaliana] gi|9279743|dbj|BAB01369.1|
contains similarity to receptor protein
kinase~gene_id:MZN24.4 [Arabidopsis thaliana]
gi|28393005|gb|AAO41937.1| putative pollen coat receptor
kinase [Arabidopsis thaliana]
Length = 278
Score = 47.8 bits (112), Expect = 6e-05
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 CSDCLERSLYYAKECGRGKEGVRVYSGICRLRYDMYPFLNDE-YYYT 329
C++C+ + + +EC K+GVRV S C RY++YPF+N + YYT
Sbjct: 230 CNECMLYYIVHFQECWENKQGVRVLSRSCNFRYELYPFINPKGPYYT 276
>ref|NP_188831.1| receptor kinase, putative; protein id: At3g21930.1 [Arabidopsis
thaliana]
Length = 300
Score = 46.2 bits (108), Expect = 2e-04
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 CSDCLERSLYYAKECGRGKEGVRVYSGICRLRYDMYPFLNDE-YYYT 329
C++C+ + + +EC K+GVRV S C RY++YPF++ + YYT
Sbjct: 252 CNECMLYYIVHFQECWESKQGVRVLSRSCNFRYELYPFISPKGSYYT 298
>dbj|BAB01370.1| contains similarity to receptor protein kinase~gene_id:MZN24.5
[Arabidopsis thaliana]
Length = 278
Score = 46.2 bits (108), Expect = 2e-04
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -2
Query: 466 CSDCLERSLYYAKECGRGKEGVRVYSGICRLRYDMYPFLNDE-YYYT 329
C++C+ + + +EC K+GVRV S C RY++YPF++ + YYT
Sbjct: 230 CNECMLYYIVHFQECWESKQGVRVLSRSCNFRYELYPFISPKGSYYT 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,250,576
Number of Sequences: 1393205
Number of extensions: 8359130
Number of successful extensions: 23558
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 21871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23508
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
