Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002627A_C01 KMC002627A_c01
(1076 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O81919|CRTC_BETVU Calreticulin precursor gi|7441494|pir||T145... 427 e-124
sp|P93508|CRTC_RICCO Calreticulin precursor gi|7441496|pir||T101... 416 e-122
ref|NP_176030.1| calreticulin (crt1); protein id: At1g56340.1, s... 413 e-121
gb|AAN60341.1| unknown [Arabidopsis thaliana] 413 e-121
gb|AAA80652.1| calreticulin 415 e-121
>sp|O81919|CRTC_BETVU Calreticulin precursor gi|7441494|pir||T14554 calreticulin - beet
gi|3288109|emb|CAA05161.1| calreticulin [Beta vulgaris]
Length = 416
Score = 427 bits (1099), Expect(2) = e-124
Identities = 200/229 (87%), Positives = 210/229 (91%)
Frame = +1
Query: 310 LSFFSASSRSLPPKVFFEERFDDGWENRWVKSEWKKDESLAGEWNYTSGQWNGDANDKGI 489
LS F+ +S KVFFEERF+DGWE RWVKSEWKKDES+AGEWNYTSG+WNGDANDKGI
Sbjct: 17 LSLFAIASA----KVFFEERFEDGWEKRWVKSEWKKDESMAGEWNYTSGKWNGDANDKGI 72
Query: 490 QTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQKKLGGDT 669
QTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLS +VDQKK GGDT
Sbjct: 73 QTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDT 132
Query: 670 PYSIMSGPDICGYTTKKVHAILTYNGTNHLIKKDVPCETDQLTHVYTFILRPDATYSILI 849
PYSIM GPDICGY+TKKVHAI YN TNHLIKKDVPCETDQLTHVYTFILRPDATYSILI
Sbjct: 133 PYSIMFGPDICGYSTKKVHAIFNYNDTNHLIKKDVPCETDQLTHVYTFILRPDATYSILI 192
Query: 850 DNVEKQTGSLYSDWSLLPTKKIKDPEAKKPEDWDDKEYIPDPEDKQSRG 996
DN EKQTGSLY+DW LLP KKIKDPEAKKPEDWDDKE+IPDPEDK+ G
Sbjct: 193 DNQEKQTGSLYTDWDLLPAKKIKDPEAKKPEDWDDKEFIPDPEDKKPEG 241
Score = 39.7 bits (91), Expect(2) = e-124
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +3
Query: 987 KQRGMMHIPESIPDTDAKKPEDGDDDEDGE 1076
K G IP I D +AKKPED DD+EDGE
Sbjct: 238 KPEGYDDIPAEITDPEAKKPEDWDDEEDGE 267
>sp|P93508|CRTC_RICCO Calreticulin precursor gi|7441496|pir||T10172 calreticulin - castor
bean gi|1658197|gb|AAB71419.1| calreticulin [Ricinus
communis] gi|1763297|gb|AAB71420.1| calreticulin
[Ricinus communis]
Length = 415
Score = 416 bits (1070), Expect(2) = e-122
Identities = 193/231 (83%), Positives = 208/231 (89%), Gaps = 1/231 (0%)
Frame = +1
Query: 307 ALSFFSASSRSLPP-KVFFEERFDDGWENRWVKSEWKKDESLAGEWNYTSGQWNGDANDK 483
+LS F S ++ +VFFEERF+DGWENRWVKS+WKKDE+ AGEWNYTSG+WNGD NDK
Sbjct: 6 SLSLFLLSLLAIASAEVFFEERFEDGWENRWVKSDWKKDENTAGEWNYTSGKWNGDPNDK 65
Query: 484 GIQTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQKKLGG 663
GIQTSEDYRFYAISAEFPEFSNKD TLVFQFSVKHEQKLDCGGGYMKLLS DQKK GG
Sbjct: 66 GIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSSSTDQKKFGG 125
Query: 664 DTPYSIMSGPDICGYTTKKVHAILTYNGTNHLIKKDVPCETDQLTHVYTFILRPDATYSI 843
DTPYSIM GPDICGY+TKKVHAIL YN TNHLIKK+VPCETDQLTHVYT ++RPDATYSI
Sbjct: 126 DTPYSIMFGPDICGYSTKKVHAILNYNDTNHLIKKEVPCETDQLTHVYTLVIRPDATYSI 185
Query: 844 LIDNVEKQTGSLYSDWSLLPTKKIKDPEAKKPEDWDDKEYIPDPEDKQSRG 996
LIDNVEKQTGSLY+DW LLP KKIKDPEAKKPEDWD+KEYIPDPEDK+ G
Sbjct: 186 LIDNVEKQTGSLYTDWDLLPPKKIKDPEAKKPEDWDEKEYIPDPEDKKPEG 236
Score = 45.1 bits (105), Expect(2) = e-122
Identities = 20/30 (66%), Positives = 22/30 (72%)
Frame = +3
Query: 987 KQRGMMHIPESIPDTDAKKPEDGDDDEDGE 1076
K G IP+ IPD DAKKPED DD+EDGE
Sbjct: 233 KPEGYDDIPKEIPDPDAKKPEDWDDEEDGE 262
>ref|NP_176030.1| calreticulin (crt1); protein id: At1g56340.1, supported by cDNA:
gi_17065103, supported by cDNA: gi_2052378 [Arabidopsis
thaliana] gi|11131540|sp|O04151|CRT1_ARATH Calreticulin
1 precursor gi|25295764|pir||C96605 calreticulin (Crt1)
[imported] - Arabidopsis thaliana
gi|2052379|gb|AAC49695.1| calreticulin
gi|12321748|gb|AAG50908.1|AC069159_9 calreticulin (crt1)
[Arabidopsis thaliana]
gi|12323027|gb|AAG51504.1|AC058785_7 calreticulin (Crt1)
[Arabidopsis thaliana] gi|17065104|gb|AAL32706.1|
calreticulin (Crt1) [Arabidopsis thaliana]
Length = 425
Score = 413 bits (1062), Expect(2) = e-121
Identities = 188/216 (87%), Positives = 201/216 (93%)
Frame = +1
Query: 349 KVFFEERFDDGWENRWVKSEWKKDESLAGEWNYTSGQWNGDANDKGIQTSEDYRFYAISA 528
+V FEE+F+DGWE RWVKS+WKKD++ AGEW +T+G W+GDANDKGIQTSEDYRFYAISA
Sbjct: 23 EVIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISA 82
Query: 529 EFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQKKLGGDTPYSIMSGPDICGY 708
EFPEFSNKD TLVFQFSVKHEQKLDCGGGYMKLLSDDVDQ K GGDTPYSIM GPDICGY
Sbjct: 83 EFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQTKFGGDTPYSIMFGPDICGY 142
Query: 709 TTKKVHAILTYNGTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSD 888
+TKKVHAILTYNGTNHLIKK+VPCETDQLTHVYTF+LRPDATYSILIDNVEKQTGSLYSD
Sbjct: 143 STKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSD 202
Query: 889 WSLLPTKKIKDPEAKKPEDWDDKEYIPDPEDKQSRG 996
W LLP KKIKDP AKKPEDWDDKEYIPDPED + G
Sbjct: 203 WDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAG 238
Score = 47.0 bits (110), Expect(2) = e-121
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 987 KQRGMMHIPESIPDTDAKKPEDGDDDEDGE 1076
K G IP+ IPDTDAKKPED DD+EDGE
Sbjct: 235 KPAGYDDIPKEIPDTDAKKPEDWDDEEDGE 264
>gb|AAN60341.1| unknown [Arabidopsis thaliana]
Length = 416
Score = 413 bits (1062), Expect(2) = e-121
Identities = 188/216 (87%), Positives = 201/216 (93%)
Frame = +1
Query: 349 KVFFEERFDDGWENRWVKSEWKKDESLAGEWNYTSGQWNGDANDKGIQTSEDYRFYAISA 528
+V FEE+F+DGWE RWVKS+WKKD++ AGEW +T+G W+GDANDKGIQTSEDYRFYAISA
Sbjct: 23 EVIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISA 82
Query: 529 EFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQKKLGGDTPYSIMSGPDICGY 708
EFPEFSNKD TLVFQFSVKHEQKLDCGGGYMKLLSDDVDQ K GGDTPYSIM GPDICGY
Sbjct: 83 EFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQTKFGGDTPYSIMFGPDICGY 142
Query: 709 TTKKVHAILTYNGTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSD 888
+TKKVHAILTYNGTNHLIKK+VPCETDQLTHVYTF+LRPDATYSILIDNVEKQTGSLYSD
Sbjct: 143 STKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSD 202
Query: 889 WSLLPTKKIKDPEAKKPEDWDDKEYIPDPEDKQSRG 996
W LLP KKIKDP AKKPEDWDDKEYIPDPED + G
Sbjct: 203 WDLLPAKKIKDPSAKKPEDWDDKEYIPDPEDTKPAG 238
Score = 47.0 bits (110), Expect(2) = e-121
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +3
Query: 987 KQRGMMHIPESIPDTDAKKPEDGDDDEDGE 1076
K G IP+ IPDTDAKKPED DD+EDGE
Sbjct: 235 KPAGYDDIPKEIPDTDAKKPEDWDDEEDGE 264
>gb|AAA80652.1| calreticulin
Length = 409
Score = 415 bits (1066), Expect(2) = e-121
Identities = 191/215 (88%), Positives = 201/215 (92%)
Frame = +1
Query: 352 VFFEERFDDGWENRWVKSEWKKDESLAGEWNYTSGQWNGDANDKGIQTSEDYRFYAISAE 531
V FEERFDDGWENRWVKSEWKKD++ AGEW +T+G W+GDANDKGIQTSEDYRFYAISAE
Sbjct: 9 VIFEERFDDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAE 68
Query: 532 FPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQKKLGGDTPYSIMSGPDICGYT 711
FPEFSNKD TLVFQFSVKHEQKLDCGGGYMKLLS DVDQKK GGDTPYSIM GPDICGY+
Sbjct: 69 FPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYS 128
Query: 712 TKKVHAILTYNGTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDW 891
TKKVHAILTYNG NHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDW
Sbjct: 129 TKKVHAILTYNGANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDW 188
Query: 892 SLLPTKKIKDPEAKKPEDWDDKEYIPDPEDKQSRG 996
LLP KKIKDP AKKPEDWD++EYI DPEDK++ G
Sbjct: 189 DLLPPKKIKDPSAKKPEDWDEQEYISDPEDKKTDG 223
Score = 45.4 bits (106), Expect(2) = e-121
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 987 KQRGMMHIPESIPDTDAKKPEDGDDDEDGE 1076
K G IP+ IPDTD+KKPED DD+EDGE
Sbjct: 220 KTDGYDDIPKEIPDTDSKKPEDWDDEEDGE 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 972,750,759
Number of Sequences: 1393205
Number of extensions: 22637800
Number of successful extensions: 89311
Number of sequences better than 10.0: 240
Number of HSP's better than 10.0 without gapping: 77562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87958
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64568047518
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
