Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002626A_C01 KMC002626A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB17203.1| putative branched-chain amino acid aminotransfer... 87 2e-16
dbj|BAB08855.1| branched-chain amino acid aminotransferase-like ... 64 2e-09
ref|NP_200593.2| branched-chain amino acid aminotransferase-like... 64 2e-09
ref|NP_085750.1| branched-chain amino acid aminotransferase [Mes... 39 0.043
gb|ZP_00012131.1| hypothetical protein [Rhodopseudomonas palustris] 38 0.095
>dbj|BAB17203.1| putative branched-chain amino acid aminotransferase protein [Oryza
sativa (japonica cultivar-group)]
Length = 295
Score = 86.7 bits (213), Expect = 2e-16
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = -1
Query: 533 KASAEMMFVGSTLPVLPIIAWDDQPIGDGRVGELTMKLSDLLWDDMVAGPDTQRIAVPY 357
+ SAEM FVGS LPVLPI+ WDDQ IGDG+VG+ M LSDLLW+DM +GPD RIAVPY
Sbjct: 238 RCSAEMAFVGSGLPVLPIVEWDDQLIGDGKVGKTMMALSDLLWEDMKSGPD--RIAVPY 294
>dbj|BAB08855.1| branched-chain amino acid aminotransferase-like protein
[Arabidopsis thaliana]
Length = 296
Score = 63.5 bits (153), Expect = 2e-09
Identities = 27/59 (45%), Positives = 41/59 (68%)
Frame = -1
Query: 533 KASAEMMFVGSTLPVLPIIAWDDQPIGDGRVGELTMKLSDLLWDDMVAGPDTQRIAVPY 357
K + EMM +GS +P+ P+I WD++ IG+G+ G + L DLL +DM +GP + R+ VPY
Sbjct: 238 KKADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 296
>ref|NP_200593.2| branched-chain amino acid aminotransferase-like protein; protein
id: At5g57850.1, supported by cDNA: gi_20466633
[Arabidopsis thaliana] gi|26391525|sp|Q8L493|BAL3_ARATH
Branched-chain amino acid aminotransferase-like protein
3, chloroplast precursor gi|20466634|gb|AAM20634.1|
branched-chain amino acid aminotransferase-like protein
[Arabidopsis thaliana] gi|22136392|gb|AAM91274.1|
branched-chain amino acid aminotransferase-like protein
[Arabidopsis thaliana]
Length = 373
Score = 63.5 bits (153), Expect = 2e-09
Identities = 27/59 (45%), Positives = 41/59 (68%)
Frame = -1
Query: 533 KASAEMMFVGSTLPVLPIIAWDDQPIGDGRVGELTMKLSDLLWDDMVAGPDTQRIAVPY 357
K + EMM +GS +P+ P+I WD++ IG+G+ G + L DLL +DM +GP + R+ VPY
Sbjct: 315 KKADEMMLIGSGIPIRPVIQWDEEFIGEGKEGPIAKALLDLLLEDMRSGPPSVRVLVPY 373
>ref|NP_085750.1| branched-chain amino acid aminotransferase [Mesorhizobium loti]
gi|14027999|dbj|BAB54591.1| branched-chain amino acid
aminotransferase [Mesorhizobium loti]
Length = 291
Score = 38.9 bits (89), Expect = 0.043
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = -1
Query: 542 RKAKASAEMMFVGSTLP-VLPIIAWDDQPIGDGRVGELTMKLSDLLWD 402
R A+ +F+ ST ++P+ D+ +GDG+VG LT +L+DL W+
Sbjct: 230 RNELKGADEVFITSTAGGIMPVSKIDETVVGDGKVGALTRQLADLYWE 277
>gb|ZP_00012131.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 285
Score = 37.7 bits (86), Expect = 0.095
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -1
Query: 539 KAKASAEMMFVGSTLPVLPIIAWDDQPIGDGRVGELTMKLSD 414
+A +AE S+ V+P++A D QPIGDG+ G L +L +
Sbjct: 235 EAAGAAEAFVTASSQIVMPVVAIDGQPIGDGKPGALAKRLRE 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,771,794
Number of Sequences: 1393205
Number of extensions: 8816269
Number of successful extensions: 24658
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 24178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24648
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
