Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002624A_C02 KMC002624A_c02
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563836.1| ATP-dependent Clp protease proteolytic subunit ... 89 3e-17
pir||D86223 hypothetical protein [imported] - Arabidopsis thalia... 50 1e-05
ref|NP_354269.1| AGR_C_2324p [Agrobacterium tumefaciens] gi|1793... 35 0.77
sp|P75475|ARCA_MYCPN Putative arginine deiminase (ADI) (Arginine... 35 0.77
ref|NP_109993.1| (C-terminal, fragment) [Mycoplasma pneumoniae] ... 35 0.77
>ref|NP_563836.1| ATP-dependent Clp protease proteolytic subunit (ClpR3), putative;
protein id: At1g09130.1 [Arabidopsis thaliana]
gi|22531207|gb|AAM97107.1| ATP-dependent Clp protease
proteolytic subunit (ClpR3), putative [Arabidopsis
thaliana] gi|25083963|gb|AAN72143.1| ATP-dependent Clp
protease proteolytic subunit (ClpR3), putative
[Arabidopsis thaliana]
Length = 330
Score = 89.4 bits (220), Expect = 3e-17
Identities = 41/54 (75%), Positives = 48/54 (87%)
Frame = -1
Query: 537 ETVANVMKRPYYMDSTRAKEFGVIDKILWRGQEKVMADVAAPEEWDKGAGIKVV 376
ETVANVM+RPYYMD+ +AKEFGVID+ILWRGQEK++ADV EE+DK AGIK V
Sbjct: 276 ETVANVMRRPYYMDAPKAKEFGVIDRILWRGQEKIIADVVPSEEFDKNAGIKSV 329
>pir||D86223 hypothetical protein [imported] - Arabidopsis thaliana
gi|2342674|gb|AAB70396.1| Similar to ATP-dependent Clp
protease (gb|D90915). EST gb|N65461 comes from this
gene. [Arabidopsis thaliana]
Length = 292
Score = 50.4 bits (119), Expect = 1e-05
Identities = 21/27 (77%), Positives = 26/27 (95%)
Frame = -1
Query: 537 ETVANVMKRPYYMDSTRAKEFGVIDKI 457
ETVANVM+RPYYMD+ +AKEFGVID++
Sbjct: 259 ETVANVMRRPYYMDAPKAKEFGVIDRV 285
>ref|NP_354269.1| AGR_C_2324p [Agrobacterium tumefaciens]
gi|17935161|ref|NP_531951.1| ATP-dependent Clp protease,
proteolytic subunit [Agrobacterium tumefaciens str. C58
(U. Washington)] gi|21759066|sp|Q8UFY6|CLP2_AGRT5
ATP-dependent Clp protease proteolytic subunit 2
(Endopeptidase Clp 2) gi|25289865|pir||E97512 clpp
(AF218420) [imported] - Agrobacterium tumefaciens
(strain C58, Cereon) gi|25289867|pir||AE2731
ATP-dependent Clp proteinase, proteolytic subunit clpP
[imported] - Agrobacterium tumefaciens (strain C58,
Dupont) gi|15156306|gb|AAK87054.1| AGR_C_2324p
[Agrobacterium tumefaciens str. C58 (Cereon)]
gi|17739665|gb|AAL42267.1| ATP-dependent Clp protease,
proteolytic subunit [Agrobacterium tumefaciens str. C58
(U. Washington)]
Length = 210
Score = 34.7 bits (78), Expect = 0.77
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -1
Query: 537 ETVANVMKRPYYMDSTRAKEFGVIDKILWRGQE 439
E V + R ++MD+ AK++GVIDKIL QE
Sbjct: 171 EEVEKTLDRDHFMDADEAKDWGVIDKILTSRQE 203
>sp|P75475|ARCA_MYCPN Putative arginine deiminase (ADI) (Arginine dihydrolase) (AD)
Length = 404
Score = 34.7 bits (78), Expect = 0.77
Identities = 18/41 (43%), Positives = 24/41 (57%)
Frame = -2
Query: 395 VLALKLWMDFSSSFMDISLVNVISLERWYHVKEWLSMGPRN 273
VLA K+ D S+SF I ++NV L H+ WL+M RN
Sbjct: 238 VLAKKIQQDSSTSFKRIFVINVPQLPNLMHLDTWLTMLDRN 278
>ref|NP_109993.1| (C-terminal, fragment) [Mycoplasma pneumoniae]
gi|2146061|pir||S73857 arginine deiminase (EC 3.5.3.6)
arcA - Mycoplasma pneumoniae (strain ATCC 29342)
gi|1674227|gb|AAB96179.1| (C-terminal, fragment)
[Mycoplasma pneumoniae]
Length = 198
Score = 34.7 bits (78), Expect = 0.77
Identities = 18/41 (43%), Positives = 24/41 (57%)
Frame = -2
Query: 395 VLALKLWMDFSSSFMDISLVNVISLERWYHVKEWLSMGPRN 273
VLA K+ D S+SF I ++NV L H+ WL+M RN
Sbjct: 32 VLAKKIQQDSSTSFKRIFVINVPQLPNLMHLDTWLTMLDRN 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,904,456
Number of Sequences: 1393205
Number of extensions: 9896258
Number of successful extensions: 21280
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21278
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
