Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002622A_C01 KMC002622A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF98368.1|AF158027_1 patatin-like protein 1 [Nicotiana tabacum] 114 8e-25
gb|AAD22149.1|AF061282_2 patatin-like protein [Sorghum bicolor] 98 2e-23
gb|AAK18751.1| patatin-like protein [Vigna unguiculata] gi|13489... 101 3e-22
gb|AAD22170.1|AF061282_24 patatin-like protein [Sorghum bicolor] 100 6e-22
pir||T10260 patatin-like protein - cucumber (fragment) gi|246226... 99 1e-21
>gb|AAF98368.1|AF158027_1 patatin-like protein 1 [Nicotiana tabacum]
Length = 420
Score = 114 bits (286), Expect = 8e-25
Identities = 60/114 (52%), Positives = 84/114 (73%)
Frame = -2
Query: 608 LIDMFSQSSGDMVDFHLSTVTQAHHSEDNYLRIQDDTLAGTDSSVDISTKENLERLSQIG 429
LI++F QSS D+VD+H S V QA HS++NYLRIQ+D L+GT++SVDI+TKENLERL +IG
Sbjct: 296 LIEVFFQSSADLVDYHNSVVFQALHSDNNYLRIQEDELSGTEASVDIATKENLERLVEIG 355
Query: 428 ISLLKKPVSKVNLDSGLCETMPNAGKPMKMLSKGLQKRFLKKGDSEN*DPLTPK 267
+LLKKP+S+VNL++GL E +P G + L + + ++ E+ PLT K
Sbjct: 356 QNLLKKPLSRVNLETGLTEPIPKGGTNEEALIRFARLLVNERRLRESRSPLTKK 409
>gb|AAD22149.1|AF061282_2 patatin-like protein [Sorghum bicolor]
Length = 438
Score = 98.2 bits (243), Expect(2) = 2e-23
Identities = 48/85 (56%), Positives = 63/85 (73%)
Frame = -2
Query: 608 LIDMFSQSSGDMVDFHLSTVTQAHHSEDNYLRIQDDTLAGTDSSVDISTKENLERLSQIG 429
+ID+FS +S DMVD H + + +A H E NYLRIQDD+L G SSVDI+TKEN+E L IG
Sbjct: 327 IIDIFSHASADMVDIHAAVLFEALHCEKNYLRIQDDSLTGHASSVDIATKENMEALIGIG 386
Query: 428 ISLLKKPVSKVNLDSGLCETMPNAG 354
LLKKPV++VN+D+G+ E + G
Sbjct: 387 KKLLKKPVARVNIDTGMYEPVAGEG 411
Score = 32.3 bits (72), Expect(2) = 2e-23
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1
Query: 348 HEDALKRFAKTLSQERRLRE 289
+EDAL RFAK LS ERRLR+
Sbjct: 413 NEDALARFAKMLSDERRLRQ 432
>gb|AAK18751.1| patatin-like protein [Vigna unguiculata] gi|13489049|gb|AAK27797.1|
patatin-like protein [Vigna unguiculata]
Length = 400
Score = 101 bits (251), Expect(2) = 3e-22
Identities = 49/79 (62%), Positives = 63/79 (79%)
Frame = -2
Query: 608 LIDMFSQSSGDMVDFHLSTVTQAHHSEDNYLRIQDDTLAGTDSSVDISTKENLERLSQIG 429
LID+FS +S DMVDFH+S+V QA H+E NYLRIQDDTL G SVD++T++NL L Q+
Sbjct: 290 LIDVFSHASSDMVDFHISSVFQARHAEQNYLRIQDDTLTGDLGSVDVATEKNLNGLVQVA 349
Query: 428 ISLLKKPVSKVNLDSGLCE 372
+LLKKPVSK+NL +G+ E
Sbjct: 350 EALLKKPVSKINLRTGIHE 368
Score = 25.8 bits (55), Expect(2) = 3e-22
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 354 KAHEDALKRFAKTLSQERRLRE 289
+ + +ALKRFA LS +RR R+
Sbjct: 374 ETNAEALKRFAARLSNQRRFRK 395
>gb|AAD22170.1|AF061282_24 patatin-like protein [Sorghum bicolor]
Length = 410
Score = 100 bits (250), Expect(2) = 6e-22
Identities = 51/92 (55%), Positives = 66/92 (71%)
Frame = -2
Query: 608 LIDMFSQSSGDMVDFHLSTVTQAHHSEDNYLRIQDDTLAGTDSSVDISTKENLERLSQIG 429
+ID+FS +S DMVD H S + QA H E NYLRIQDD+L G SSVDI+TKEN+E L IG
Sbjct: 299 IIDIFSHASSDMVDIHASVLFQALHCEKNYLRIQDDSLTGDASSVDIATKENMESLIGIG 358
Query: 428 ISLLKKPVSKVNLDSGLCETMPNAGKPMKMLS 333
LLKKPV++VN+D+G+ E+ G + L+
Sbjct: 359 QELLKKPVARVNIDTGVYESCSGEGTNAEALA 390
Score = 25.0 bits (53), Expect(2) = 6e-22
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 342 DALKRFAKTLSQERRLRE 289
+AL FAK LS ER+LR+
Sbjct: 387 EALAHFAKQLSDERKLRK 404
>pir||T10260 patatin-like protein - cucumber (fragment)
gi|2462265|emb|CAA73328.1| patatin-like protein [Cucumis
sativus]
Length = 405
Score = 99.0 bits (245), Expect(2) = 1e-21
Identities = 48/93 (51%), Positives = 69/93 (73%)
Frame = -2
Query: 608 LIDMFSQSSGDMVDFHLSTVTQAHHSEDNYLRIQDDTLAGTDSSVDISTKENLERLSQIG 429
++D+FS +S DMVD+H+S++ Q+ H NYLRIQDDTL+G SSVDI+T+ENL L +G
Sbjct: 298 IVDIFSDASADMVDYHISSIFQSDHCHKNYLRIQDDTLSGEVSSVDIATEENLLNLIYVG 357
Query: 428 ISLLKKPVSKVNLDSGLCETMPNAGKPMKMLSK 330
+LLKKP+S+VNL+SG E + G + L++
Sbjct: 358 ENLLKKPLSRVNLESGKFEPLDAKGTNEQALAE 390
Score = 26.2 bits (56), Expect(2) = 1e-21
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 348 HEDALKRFAKTLSQERRLR 292
+E AL FAK LS ER+LR
Sbjct: 384 NEQALAEFAKMLSNERKLR 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,804,315
Number of Sequences: 1393205
Number of extensions: 9870210
Number of successful extensions: 25483
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 25047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25478
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
