Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002620A_C01 KMC002620A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC12822.1| AP2 domain-containing transcription factor [Nico... 105 5e-22
ref|NP_188299.1| AP2 domain protein RAP2.3; protein id: At3g1677... 102 7e-21
emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana] 98 1e-19
dbj|BAC56862.1| AP2/ERF-domain protein [Solanum tuberosum] 96 4e-19
dbj|BAC16014.1| EREBP(Ethylene-responsive element-binding protei... 91 2e-17
>emb|CAC12822.1| AP2 domain-containing transcription factor [Nicotiana tabacum]
Length = 226
Score = 105 bits (263), Expect = 5e-22
Identities = 66/123 (53%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
Frame = -2
Query: 691 AEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTVAAPPPTKKQRCLS 512
AEIRDPQKGVRVWLGTF TAEEAARAYDEAAKRIRGDKAKLNFP+ P P K+ C S
Sbjct: 78 AEIRDPQKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFPE---PPSPPAKRHCTS 134
Query: 511 --PEQPEYSSSGSSGPTTTTTG----SSDSSAPIITTGLEDQPN----LKLQISDIEWFL 362
P+QP S S P + + P+ ED + LK QIS++E FL
Sbjct: 135 TIPDQPTRSDLMSQKPASIMLNYGYENQTPYYPMEMPAAEDPQHHDYELKEQISNLESFL 194
Query: 361 GLD 353
L+
Sbjct: 195 DLE 197
>ref|NP_188299.1| AP2 domain protein RAP2.3; protein id: At3g16770.1, supported by
cDNA: 35981., supported by cDNA: gi_14334853, supported
by cDNA: gi_16649094, supported by cDNA: gi_2281630
[Arabidopsis thaliana] gi|27735162|sp|P42736|AP23_ARATH
AP2 domain transcription factor RAP2.3 (Related to AP2
protein 3) (Cadmium-induced protein AS30)
gi|2281631|gb|AAC49769.1| AP2 domain containing protein
RAP2.3 [Arabidopsis thaliana]
gi|11994632|dbj|BAB02769.1| AP2 domain transcription
factor RAP2.3 [Arabidopsis thaliana]
gi|14334854|gb|AAK59605.1| putative AP2 domain
containing protein RAP2.3 [Arabidopsis thaliana]
gi|16649095|gb|AAL24399.1| AP2 domain transcription
factor RAP2.3 [Arabidopsis thaliana]
gi|21593082|gb|AAM65031.1| AP2 domain containing protein
RAP2.3 [Arabidopsis thaliana] gi|23296611|gb|AAN13131.1|
putative AP2 domain containing protein RAP2.3
[Arabidopsis thaliana]
Length = 248
Score = 102 bits (253), Expect = 7e-21
Identities = 63/135 (46%), Positives = 72/135 (52%), Gaps = 14/135 (10%)
Frame = -2
Query: 691 AEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTVAAPPPTKKQRCLS 512
AEIRDP+KGVRVWLGTF TAEEAA AYD AAK+IRGDKAKLNFPD PPP S
Sbjct: 92 AEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSS 151
Query: 511 P--------------EQPEYSSSGSSGPTTTTTGSSDSSAPIITTGLEDQPNLKLQISDI 374
P Q E S S P + ++ G E +LK QIS +
Sbjct: 152 PRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSL 211
Query: 373 EWFLGLDNEPVQAPA 329
E FL LD + P+
Sbjct: 212 ESFLELDGNTAEQPS 226
>emb|CAA05084.1| putative Ckc2 [Arabidopsis thaliana]
Length = 246
Score = 98.2 bits (243), Expect = 1e-19
Identities = 60/132 (45%), Positives = 73/132 (54%), Gaps = 11/132 (8%)
Frame = -2
Query: 691 AEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDT---VAAPPPTKKQR 521
AEIRDP+KGVRVWLGTF TAEEAA AYD AAK+IRG+KAKLNFPD + PPP+
Sbjct: 93 AEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGEKAKLNFPDLDHHPSTPPPSSTSL 152
Query: 520 CLSPEQP--------EYSSSGSSGPTTTTTGSSDSSAPIITTGLEDQPNLKLQISDIEWF 365
LS + P + + S P + G E +LK QIS +E F
Sbjct: 153 RLSDQPPAKKVCVVSQSELAQPSFPVECVGFGKGEEFQNLMYGFEPDYDLKQQISSLESF 212
Query: 364 LGLDNEPVQAPA 329
L LD + P+
Sbjct: 213 LELDGTTAEQPS 224
>dbj|BAC56862.1| AP2/ERF-domain protein [Solanum tuberosum]
Length = 264
Score = 96.3 bits (238), Expect = 4e-19
Identities = 62/133 (46%), Positives = 78/133 (58%), Gaps = 20/133 (15%)
Frame = -2
Query: 691 AEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTVAAPPPTKKQRCLS 512
AEIRDPQKGVRVWLGTF TAE+AARAYDEAAKRIRG+KAKLNFP AP P K++C
Sbjct: 110 AEIRDPQKGVRVWLGTFNTAEDAARAYDEAAKRIRGNKAKLNFP----APSPPAKRQCT- 164
Query: 511 PEQPEYSSSGSSGPTTTTTGSSD----SSAPIITTGLE----------------DQPNLK 392
S+ + P SS+ +++P++ G + D LK
Sbjct: 165 ------STVAADPPPALLLESSNIISYNNSPLMNFGYDVQSQTPYYPMEMPVASDDYELK 218
Query: 391 LQISDIEWFLGLD 353
QIS++E FL L+
Sbjct: 219 EQISNLESFLELE 231
>dbj|BAC16014.1| EREBP(Ethylene-responsive element-binding protein)-like
protein~contains ESTs AU173302(R2073),D24504(R2073)
[Oryza sativa (japonica cultivar-group)]
gi|24060034|dbj|BAC21491.1| EREBP(Ethylene-responsive
element-binding protein)-like protein~contains ESTs
AU173302(R2073),D24504(R2073) [Oryza sativa (japonica
cultivar-group)]
Length = 341
Score = 90.9 bits (224), Expect = 2e-17
Identities = 48/74 (64%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = -2
Query: 691 AEIRDPQKGVRVWLGTFPTAEEAARAYDEAAKRIRGDKAKLNFPDTVAAPP--PTKKQRC 518
AEIRDP+KGVRVWLGTF TAEEAA AYD A+RIRG KAK+NFPD AA P P +
Sbjct: 124 AEIRDPRKGVRVWLGTFGTAEEAAMAYDVEARRIRGKKAKVNFPDAAAAAPKRPRRSSAK 183
Query: 517 LSPEQPEYSSSGSS 476
SP+Q + SS SS
Sbjct: 184 HSPQQQKARSSSSS 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 711,133,414
Number of Sequences: 1393205
Number of extensions: 19427506
Number of successful extensions: 376455
Number of sequences better than 10.0: 5520
Number of HSP's better than 10.0 without gapping: 115847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258505
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
