Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002619A_C01 KMC002619A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB53493.1| CAA303720.1 protein [Oryza sativa] 89 8e-17
ref|NP_176984.1| MtN21-like protein; protein id: At1g68170.1 [Ar... 86 4e-16
dbj|BAB55763.1| putative MtN21 [Oryza sativa (japonica cultivar-... 86 6e-16
ref|NP_194533.1| Medicago nodulin N21-like protein; protein id: ... 82 9e-15
ref|NP_196322.1| MtN21 nodulin protein-like; protein id: At5g070... 80 2e-14
>emb|CAB53493.1| CAA303720.1 protein [Oryza sativa]
Length = 376
Score = 88.6 bits (218), Expect = 8e-17
Identities = 38/63 (60%), Positives = 54/63 (85%)
Frame = +1
Query: 82 VLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGLYIVLWGK 261
V+ +W ++ +GPL+AS FNPL LV+VA+ GSL LDEK+++G+++GA LIV+GLY VLWGK
Sbjct: 239 VVLSWCVKRRGPLFASVFNPLMLVVVAVLGSLLLDEKMHVGTLLGAALIVVGLYAVLWGK 298
Query: 262 GKE 270
G+E
Sbjct: 299 GRE 301
>ref|NP_176984.1| MtN21-like protein; protein id: At1g68170.1 [Arabidopsis thaliana]
gi|25404706|pir||A96705 MtN21-like protein, 91922-89607
[imported] - Arabidopsis thaliana
gi|12325325|gb|AAG52606.1|AC016447_15 MtN21-like
protein; 91922-89607 [Arabidopsis thaliana]
Length = 329
Score = 86.3 bits (212), Expect = 4e-16
Identities = 43/96 (44%), Positives = 61/96 (62%), Gaps = 1/96 (1%)
Frame = +1
Query: 22 GWNIKF-SLQFMWVCSFWNTWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLY 198
GWNI+ ++ + + + AW + +GPL+ S F+P+ LVIVA+ GS LDE L+
Sbjct: 213 GWNIRLLTIAYAAILISGMVVAVNAWCIESRGPLFVSVFSPVGLVIVALVGSFLLDETLH 272
Query: 199 LGSVIGALLIVLGLYIVLWGKGKELKSNLEPKHKND 306
LGS+IG ++IV LYIVLW K KE+KS L N+
Sbjct: 273 LGSIIGTVIIVGALYIVLWAKNKEMKSMLTTSDHNE 308
>dbj|BAB55763.1| putative MtN21 [Oryza sativa (japonica cultivar-group)]
gi|15623786|dbj|BAB67846.1| putative MtN21 [Oryza sativa
(japonica cultivar-group)]
Length = 380
Score = 85.5 bits (210), Expect = 6e-16
Identities = 40/87 (45%), Positives = 64/87 (72%), Gaps = 1/87 (1%)
Frame = +1
Query: 22 GWNIK-FSLQFMWVCSFWNTWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLY 198
G++I+ +S+ ++ V + L +W ++++GPL+ S F+PL LV+VAI G LDEK++
Sbjct: 248 GFDIRLYSVLYIGVVGSGIAFALMSWCIQVRGPLFVSMFSPLMLVVVAIVGWAILDEKIH 307
Query: 199 LGSVIGALLIVLGLYIVLWGKGKELKS 279
+GS IG++LIV GLY+VLWGK +E+ S
Sbjct: 308 VGSAIGSVLIVAGLYMVLWGKAREMGS 334
>ref|NP_194533.1| Medicago nodulin N21-like protein; protein id: At4g28040.1,
supported by cDNA: gi_13899060, supported by cDNA:
gi_20148374 [Arabidopsis thaliana]
gi|7486954|pir||T02905 hypothetical protein T13J8.150 -
Arabidopsis thaliana gi|4455363|emb|CAB36773.1| Medicago
nodulin N21-like protein [Arabidopsis thaliana]
gi|7269658|emb|CAB79606.1| Medicago nodulin N21-like
protein [Arabidopsis thaliana]
gi|13899061|gb|AAK48952.1|AF370525_1 Medicago nodulin
N21-like protein [Arabidopsis thaliana]
gi|20148375|gb|AAM10078.1| Medicago nodulin N21-like
protein [Arabidopsis thaliana]
Length = 359
Score = 81.6 bits (200), Expect = 9e-15
Identities = 39/92 (42%), Positives = 61/92 (65%), Gaps = 5/92 (5%)
Frame = +1
Query: 76 TWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLFLDEKLYLGSVIGALLIVLGLYIVLW 255
++ L AW++ KGP++++ FNPL VIV G+L+L E+ YLGS++GAL I+LGLYIVLW
Sbjct: 252 SFFLQAWIVSQKGPVFSALFNPLSAVIVTFFGALYLKEQTYLGSLLGALAIILGLYIVLW 311
Query: 256 GKGKELKS-----NLEPKHKNDPLAEVEPLEI 336
GK ++ + LE +H +++ + I
Sbjct: 312 GKSEDYQEESTDLKLENEHNTSSQSDIVSIMI 343
>ref|NP_196322.1| MtN21 nodulin protein-like; protein id: At5g07050.1 [Arabidopsis
thaliana] gi|9759561|dbj|BAB11163.1| MtN21 nodulin
protein-like [Arabidopsis thaliana]
Length = 402
Score = 80.5 bits (197), Expect = 2e-14
Identities = 38/90 (42%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Frame = +1
Query: 4 PPSMEAGWNIKF-SLQFMWVCSFWNTWVLTAWVLRLKGPLYASSFNPLFLVIVAIAGSLF 180
P + GW++ + + + + ++ + V++ +GP++A++F+PL +VIVA+ GS
Sbjct: 254 PSAWRIGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFV 313
Query: 181 LDEKLYLGSVIGALLIVLGLYIVLWGKGKE 270
L EK++LG VIGA+LIV+GLY VLWGK KE
Sbjct: 314 LAEKIFLGGVIGAVLIVIGLYAVLWGKQKE 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,869,468
Number of Sequences: 1393205
Number of extensions: 13281953
Number of successful extensions: 45737
Number of sequences better than 10.0: 171
Number of HSP's better than 10.0 without gapping: 37952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42780
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
