Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002618A_C01 KMC002618A_c01
(307 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62621.1| unknown [Arabidopsis thaliana] 42 0.002
ref|NP_567715.1| expressed protein; protein id: At4g25020.1, sup... 42 0.002
ref|NP_174617.1| unknown protein; protein id: At1g33520.1, suppo... 40 0.010
ref|NP_224312.1| CT017 hypothetical protein [Chlamydophila pneum... 32 1.7
ref|NP_603457.1| Oxygen-independent coproporphyrinogen III oxida... 31 4.9
>gb|AAM62621.1| unknown [Arabidopsis thaliana]
Length = 375
Score = 42.4 bits (98), Expect = 0.002
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = -3
Query: 305 IVRDADTHELLKVKLEQVAEYMGDPSLLGH 216
+V DAD+ E+L VKL+QVAEY+GDP+ +G+
Sbjct: 346 VVCDADSQEMLHVKLDQVAEYIGDPADIGY 375
>ref|NP_567715.1| expressed protein; protein id: At4g25020.1, supported by cDNA:
149683. [Arabidopsis thaliana] gi|7485447|pir||T05523
hypothetical protein F13M23.160 - Arabidopsis thaliana
gi|4455245|emb|CAB36744.1| hypothetical protein
[Arabidopsis thaliana] gi|7269352|emb|CAB79411.1|
hypothetical protein [Arabidopsis thaliana]
Length = 375
Score = 42.4 bits (98), Expect = 0.002
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = -3
Query: 305 IVRDADTHELLKVKLEQVAEYMGDPSLLGH 216
+V DAD+ E+L VKL+QVAEY+GDP+ +G+
Sbjct: 346 VVCDADSQEMLHVKLDQVAEYIGDPADIGY 375
>ref|NP_174617.1| unknown protein; protein id: At1g33520.1, supported by cDNA:
gi_20259489 [Arabidopsis thaliana]
gi|25365861|pir||A86459 unknown protein, 82634-81246
[imported] - Arabidopsis thaliana
gi|12322393|gb|AAG51225.1|AC051630_22 unknown protein;
82634-81246 [Arabidopsis thaliana]
gi|20259490|gb|AAM13865.1| unknown protein [Arabidopsis
thaliana]
Length = 462
Score = 39.7 bits (91), Expect = 0.010
Identities = 16/24 (66%), Positives = 21/24 (86%)
Frame = -3
Query: 305 IVRDADTHELLKVKLEQVAEYMGD 234
+VRD D H++L V+L+QVAEYMGD
Sbjct: 433 VVRDLDNHKMLDVRLDQVAEYMGD 456
>ref|NP_224312.1| CT017 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|15835640|ref|NP_300164.1| CT017 hypothetical protein
[Chlamydophila pneumoniae J138]
gi|16752941|ref|NP_445212.1| conserved hypothetical
protein [Chlamydophila pneumoniae AR39]
gi|7468027|pir||H72119 conserved hypothetical protein
CP0670 [imported] - Chlamydophila pneumoniae (strains
CWL029 and AR39) gi|25352020|pir||A86504 CT017
hypothetical protein [imported] - Chlamydophila
pneumoniae (strain J138) gi|4376365|gb|AAD18257.1| CT017
hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189585|gb|AAF38482.1| conserved hypothetical protein
[Chlamydophila pneumoniae AR39]
gi|8978478|dbj|BAA98315.1| CT017 hypothetical protein
[Chlamydophila pneumoniae J138]
Length = 400
Score = 32.3 bits (72), Expect = 1.7
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 151 IGKSIKDSQDAYLSNLLLQQNQCPNKLGSPIYSATCSSLTLSSSWVSASL 300
I K++++ QDAYLS L QN + I S+ CS+ +SSS V+ SL
Sbjct: 227 IQKALEEIQDAYLSKSLESQN-------TSIASSQCSTPKVSSSEVTTSL 269
>ref|NP_603457.1| Oxygen-independent coproporphyrinogen III oxidase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19714059|gb|AAL94756.1| Oxygen-independent
coproporphyrinogen III oxidase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 365
Score = 30.8 bits (68), Expect = 4.9
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +2
Query: 20 LEIHPKT*SFNGIG*NIMLNINKLQTSQATHTVPLLYYLGVIKE*EKALRIHKMHTCQIC 199
+E++PKT N + L IN+L T L LG I ++A+ ++ + + C
Sbjct: 92 IEVNPKTVDTNKLKEYRKLGINRLSIGIQTFNDDNLKVLGRIHSSQEAIEVYNL--AREC 149
Query: 200 CFNRINVPISLGPPY 244
F+ I++ I PY
Sbjct: 150 GFDNISLDIMFSLPY 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,886,398
Number of Sequences: 1393205
Number of extensions: 4716517
Number of successful extensions: 10174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10172
length of database: 448,689,247
effective HSP length: 77
effective length of database: 341,412,462
effective search space used: 8193899088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
