Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002614A_C01 KMC002614A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191259.1| putative protein; protein id: At3g57000.1, supp... 103 2e-21
gb|AAM65530.1| unknown [Arabidopsis thaliana] 103 2e-21
ref|XP_232345.1| similar to gene rich cluster, C2f gene [Mus mus... 72 6e-12
ref|NP_038564.1| gene rich cluster, C2f gene [Mus musculus] gi|2... 72 6e-12
sp|Q9W4J5|NEP1_DROME Probable ribosome biogenesis protein NEP1 72 8e-12
>ref|NP_191259.1| putative protein; protein id: At3g57000.1, supported by cDNA:
40153. [Arabidopsis thaliana] gi|11357621|pir||T47760
hypothetical protein F24I3.80 - Arabidopsis thaliana
gi|6911870|emb|CAB72170.1| putative protein [Arabidopsis
thaliana] gi|28466945|gb|AAO44081.1| At3g57000
[Arabidopsis thaliana]
Length = 298
Score = 103 bits (258), Expect = 2e-21
Identities = 49/82 (59%), Positives = 64/82 (77%), Gaps = 1/82 (1%)
Frame = -2
Query: 644 LPVNSRKIGLSFSSEKLVNMNDYVSTV-PSDMNLVFVVGAMAHGKVETDYTEDYIAVSGY 468
LPVNS +IG S SSEKLVNM +++TV D + VFVVGAMAHGK++ +Y +++++VS Y
Sbjct: 217 LPVNSHRIGFSHSSEKLVNMQKHLATVCDDDRDTVFVVGAMAHGKIDCNYIDEFVSVSEY 276
Query: 467 PLSAAYCITRICNALEAKWKIL 402
PLSAAYCI+RIC AL W I+
Sbjct: 277 PLSAAYCISRICEALATNWNII 298
>gb|AAM65530.1| unknown [Arabidopsis thaliana]
Length = 298
Score = 103 bits (258), Expect = 2e-21
Identities = 49/82 (59%), Positives = 64/82 (77%), Gaps = 1/82 (1%)
Frame = -2
Query: 644 LPVNSRKIGLSFSSEKLVNMNDYVSTV-PSDMNLVFVVGAMAHGKVETDYTEDYIAVSGY 468
LPVNS +IG S SSEKLVNM +++TV D + VFVVGAMAHGK++ +Y +++++VS Y
Sbjct: 217 LPVNSHRIGFSHSSEKLVNMQKHLATVCDDDRDTVFVVGAMAHGKIDCNYIDEFVSVSEY 276
Query: 467 PLSAAYCITRICNALEAKWKIL 402
PLSAAYCI+RIC AL W I+
Sbjct: 277 PLSAAYCISRICEALATNWNII 298
>ref|XP_232345.1| similar to gene rich cluster, C2f gene [Mus musculus] [Rattus
norvegicus]
Length = 244
Score = 72.0 bits (175), Expect = 6e-12
Identities = 37/80 (46%), Positives = 49/80 (61%)
Frame = -2
Query: 641 PVNSRKIGLSFSSEKLVNMNDYVSTVPSDMNLVFVVGAMAHGKVETDYTEDYIAVSGYPL 462
PV KIG SFS E +++D VPS +VFVVGA AHGKV +YTE +++S YPL
Sbjct: 168 PVGCMKIGTSFSVE---DISDIRELVPSSDPVVFVVGAFAHGKVSVEYTEKMVSISNYPL 224
Query: 461 SAAYCITRICNALEAKWKIL 402
SAA ++ A E W ++
Sbjct: 225 SAALTCAKVTTAFEEVWGVI 244
>ref|NP_038564.1| gene rich cluster, C2f gene [Mus musculus]
gi|20532163|sp|O35130|NEP1_MOUSE Probable ribosome
biogenesis protein NEP1 (C2f protein)
gi|2289907|gb|AAC36006.1| C2F [Mus musculus]
gi|12805095|gb|AAH02004.1| gene rich cluster, C2f gene
[Mus musculus] gi|26349365|dbj|BAC38322.1| unnamed
protein product [Mus musculus]
Length = 244
Score = 72.0 bits (175), Expect = 6e-12
Identities = 37/80 (46%), Positives = 49/80 (61%)
Frame = -2
Query: 641 PVNSRKIGLSFSSEKLVNMNDYVSTVPSDMNLVFVVGAMAHGKVETDYTEDYIAVSGYPL 462
PV KIG SFS E +++D VPS +VFVVGA AHGKV +YTE +++S YPL
Sbjct: 168 PVGCMKIGTSFSVE---DISDIRELVPSSDPVVFVVGAFAHGKVSVEYTEKMVSISNYPL 224
Query: 461 SAAYCITRICNALEAKWKIL 402
SAA ++ A E W ++
Sbjct: 225 SAALTCAKVTTAFEEVWGVI 244
>sp|Q9W4J5|NEP1_DROME Probable ribosome biogenesis protein NEP1
Length = 233
Score = 71.6 bits (174), Expect = 8e-12
Identities = 35/86 (40%), Positives = 53/86 (60%), Gaps = 5/86 (5%)
Frame = -2
Query: 644 LPVNSRKIGLSFSSEKLVNMNDYV-----STVPSDMNLVFVVGAMAHGKVETDYTEDYIA 480
+PV +K +SFS + L N D V ++ D +V V+GA AHG ++TDYTE+ +
Sbjct: 148 VPVGCKKYAMSFSGKLLPNCRDLVPHGDETSASYDEPVVIVIGAFAHGVLKTDYTEELFS 207
Query: 479 VSGYPLSAAYCITRICNALEAKWKIL 402
+S YPLSAA ++IC+A E W ++
Sbjct: 208 ISNYPLSAAIACSKICSAFEEVWGVV 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,226,419
Number of Sequences: 1393205
Number of extensions: 10248626
Number of successful extensions: 18190
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 17714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18171
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
