Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002608A_C01 KMC002608A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL31655.1|AC079179_10 Unknown protein [Oryza sativa] gi|2004... 34 6e-05
sp|Q05858|FMN_CHICK Formin (Limb deformity protein) gi|63568|emb... 33 5e-04
pir||A41724 limb deformity (ld) protein - chicken 33 5e-04
sp|Q9QYX7|PCLO_MOUSE Piccolo protein (Presynaptic cytomatrix pro... 36 7e-04
ref|NP_036125.2| piccolo (presynaptic cytomatrix protein); aczon... 36 7e-04
>gb|AAL31655.1|AC079179_10 Unknown protein [Oryza sativa] gi|20042881|gb|AAM08709.1|AC116601_2
Unknown protein [Oryza sativa]
Length = 1269
Score = 34.3 bits (77), Expect(2) = 6e-05
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
Frame = -2
Query: 284 PPPPPPPAG-----TPPQAPP*PP 228
PPPPPPP+G +PP PP PP
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPP 571
Score = 32.0 bits (71), Expect(2) = 6e-05
Identities = 12/29 (41%), Positives = 16/29 (54%)
Frame = -1
Query: 114 MMARPPFPAMSPRMIPRRRFESSPPPPPP 28
++ PP P P ++P R PPPPPP
Sbjct: 598 LVPSPPPPPPPPPILPNRSVPPPPPPPPP 626
Score = 31.6 bits (70), Expect(2) = 0.016
Identities = 16/35 (45%), Positives = 17/35 (47%), Gaps = 5/35 (14%)
Frame = -2
Query: 317 RVSSPGQQK**PPPPPPPA-----GTPPQAPP*PP 228
R + PG PPPPPPP G APP PP
Sbjct: 702 RTNGPGVPSAPPPPPPPPPANRSNGPSAPAPPLPP 736
Score = 31.2 bits (69), Expect = 3.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 102 PPFPAMSPRMIPRRRFESSPPPPPP 28
PP P P +P+ + SS PPPPP
Sbjct: 565 PPPPPPPPPPLPQSNYASSQPPPPP 589
Score = 31.2 bits (69), Expect = 3.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPP A PP P PP
Sbjct: 764 PPPPPPQAPKPPGTVPPPP 782
Score = 30.8 bits (68), Expect = 4.0
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 5/24 (20%)
Frame = -2
Query: 284 PPPPPPP-----AGTPPQAPP*PP 228
PPPPPPP +PP PP PP
Sbjct: 587 PPPPPPPLPNCLVPSPPPPPPPPP 610
Score = 30.8 bits (68), Expect = 4.0
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Frame = -2
Query: 284 PPPPPPP-----AGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 603 PPPPPPPPILPNRSVPPPPPPPPP 626
Score = 30.4 bits (67), Expect = 5.2
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Frame = -2
Query: 284 PPPPPPPAGTP----PQAPP*PP 228
PPPPPPP P P PP PP
Sbjct: 585 PPPPPPPPPLPNCLVPSPPPPPP 607
Score = 30.4 bits (67), Expect = 5.2
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP P + P PP
Sbjct: 636 PPPPPPPPSLPNRLVPPPP 654
Score = 30.4 bits (67), Expect = 5.2
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Frame = -2
Query: 284 PPPPPPP----AGTPPQAPP*PP 228
PPPPPPP + PP PP PP
Sbjct: 620 PPPPPPPLPNHSVLPPPPPPPPP 642
Score = 30.4 bits (67), Expect = 5.2
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 9/28 (32%)
Frame = -2
Query: 284 PPPPPPPAGTPP---------QAPP*PP 228
PPPPPPP PP Q PP PP
Sbjct: 563 PPPPPPPPPPPPLPQSNYASSQPPPPPP 590
Score = 29.6 bits (65), Expect(2) = 0.44
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 9/28 (32%)
Frame = -2
Query: 284 PPPPPPPAGTP---------PQAPP*PP 228
PPPPPPP P P APP PP
Sbjct: 689 PPPPPPPPLPPANRTNGPGVPSAPPPPP 716
Score = 29.6 bits (65), Expect = 8.8
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Frame = -2
Query: 284 PPPPPPPAGTP-----PQAPP*PP 228
PPPPPPP P P PP PP
Sbjct: 618 PPPPPPPPPLPNHSVLPPPPPPPP 641
Score = 27.7 bits (60), Expect(2) = 0.93
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP*C*RR*SSSPAAGS 186
PPPP P G APP PP R S +P +
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAA 683
Score = 26.2 bits (56), Expect(2) = 0.016
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -1
Query: 108 ARPPFPAMSPRMIPRRRFESSPPPPPPR 25
A PP P M+ + P +PPPPPP+
Sbjct: 749 APPPPPLMTGKKAP------APPPPPPQ 770
Score = 23.9 bits (50), Expect(2) = 0.93
Identities = 11/29 (37%), Positives = 12/29 (40%)
Frame = -1
Query: 102 PPFPAMSPRMIPRRRFESSPPPPPPRKKR 16
PP P + P PPPPPP R
Sbjct: 695 PPLPPANRTNGPGVPSAPPPPPPPPPANR 723
Score = 23.1 bits (48), Expect(2) = 0.44
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -1
Query: 174 PLTGRSRCRGFPAGVACSLWMMARPPFPAMSPRMIPRRRFESSPPPPPP 28
PL + R PA L + P P P P+ + PPPPP
Sbjct: 737 PLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKP--PGTVPPPPP 783
>sp|Q05858|FMN_CHICK Formin (Limb deformity protein) gi|63568|emb|CAA44555.1| limb
deformity protein [Gallus gallus]
Length = 1213
Score = 32.7 bits (73), Expect(2) = 5e-04
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PP PPPP PP PP PP
Sbjct: 652 PPSPPPPPPPPPPPPPPPP 670
Score = 32.7 bits (73), Expect = 1.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
P PPPPP PP PP PP
Sbjct: 653 PSPPPPPPPPPPPPPPPPP 671
Score = 30.4 bits (67), Expect(2) = 5e-04
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -1
Query: 153 CRGFPAGVACSLWMMARPPFPAMSPRMIPRRRFESSPPPPPP 28
CR F A A PP P + P + P PPPPPP
Sbjct: 712 CRDFQAPAP-----PAPPPLPGLGPPVPPPLPGSGLPPPPPP 748
>pir||A41724 limb deformity (ld) protein - chicken
Length = 1213
Score = 32.7 bits (73), Expect(2) = 5e-04
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PP PPPP PP PP PP
Sbjct: 652 PPSPPPPPPPPPPPPPPPP 670
Score = 32.7 bits (73), Expect = 1.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
P PPPPP PP PP PP
Sbjct: 653 PSPPPPPPPPPPPPPPPPP 671
Score = 30.4 bits (67), Expect(2) = 5e-04
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -1
Query: 153 CRGFPAGVACSLWMMARPPFPAMSPRMIPRRRFESSPPPPPP 28
CR F A A PP P + P + P PPPPPP
Sbjct: 712 CRDFQAPAP-----PAPPPLPGLGPPVPPPLPGSGLPPPPPP 748
>sp|Q9QYX7|PCLO_MOUSE Piccolo protein (Presynaptic cytomatrix protein) (Aczonin)
(Brain-derived HLMN protein) gi|15139360|emb|CAB60731.2|
aczonin [Mus musculus]
Length = 5038
Score = 35.8 bits (81), Expect(2) = 7e-04
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2306 PPPPPPPPPPPPPPPPPPP 2324
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2305 PPPPPPPPPPPPPPPPPPP 2323
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2307 PPPPPPPPPPPPPPPPPPP 2325
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2308 PPPPPPPPPPPPPPPPPPP 2326
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2311 PPPPPPPPPPPPPPPPLPP 2329
Score = 33.1 bits (74), Expect = 0.80
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP P PP
Sbjct: 2318 PPPPPPPPPLPPATSPKPP 2336
Score = 26.6 bits (57), Expect(2) = 7e-04
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 1/52 (1%)
Frame = -1
Query: 177 IPLTGRSRCRGFPAGVACSLWMMARPPFPAMSPR-MIPRRRFESSPPPPPPR 25
+ T R G PA C+ PP P+ P ++ R E+S PP P+
Sbjct: 2365 VEATAARRSNGLPATKICAAAPPPVPPKPSSIPTGLVFTHRPEASKPPIAPK 2416
>ref|NP_036125.2| piccolo (presynaptic cytomatrix protein); aczonin [Mus musculus]
gi|15139362|emb|CAB60732.2| aczonin [Mus musculus]
Length = 4833
Score = 35.8 bits (81), Expect(2) = 7e-04
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2306 PPPPPPPPPPPPPPPPPPP 2324
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2305 PPPPPPPPPPPPPPPPPPP 2323
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2307 PPPPPPPPPPPPPPPPPPP 2325
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2308 PPPPPPPPPPPPPPPPPPP 2326
Score = 35.8 bits (81), Expect = 0.12
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP PP PP
Sbjct: 2311 PPPPPPPPPPPPPPPPLPP 2329
Score = 33.1 bits (74), Expect = 0.80
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 284 PPPPPPPAGTPPQAPP*PP 228
PPPPPPP PP P PP
Sbjct: 2318 PPPPPPPPPLPPATSPKPP 2336
Score = 26.6 bits (57), Expect(2) = 7e-04
Identities = 16/52 (30%), Positives = 23/52 (43%), Gaps = 1/52 (1%)
Frame = -1
Query: 177 IPLTGRSRCRGFPAGVACSLWMMARPPFPAMSPR-MIPRRRFESSPPPPPPR 25
+ T R G PA C+ PP P+ P ++ R E+S PP P+
Sbjct: 2365 VEATAARRSNGLPATKICAAAPPPVPPKPSSIPTGLVFTHRPEASKPPIAPK 2416
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,704,037
Number of Sequences: 1393205
Number of extensions: 13192070
Number of successful extensions: 258502
Number of sequences better than 10.0: 2909
Number of HSP's better than 10.0 without gapping: 77319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197581
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
