Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002606A_C01 KMC002606A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565997.1| expressed protein; protein id: At2g43320.1, sup... 110 1e-23
gb|AAL16294.1|AF428364_1 At2g43320/T1O24.6 [Arabidopsis thaliana] 110 1e-23
pir||F84864 hypothetical protein At2g43320 [imported] - Arabidop... 99 2e-20
ref|NP_567417.1| expressed protein; protein id: At4g14000.1, sup... 57 8e-08
gb|AAM63649.1| unknown [Arabidopsis thaliana] 57 8e-08
>ref|NP_565997.1| expressed protein; protein id: At2g43320.1, supported by cDNA:
gi_14517475, supported by cDNA: gi_16226902 [Arabidopsis
thaliana] gi|14517476|gb|AAK62628.1| At2g43320/T1O24.6
[Arabidopsis thaliana] gi|20196858|gb|AAB64311.2|
expressed protein [Arabidopsis thaliana]
gi|20197145|gb|AAM14937.1| expressed protein
[Arabidopsis thaliana] gi|22136568|gb|AAM91070.1|
At2g43320/T1O24.6 [Arabidopsis thaliana]
Length = 351
Score = 110 bits (274), Expect = 1e-23
Identities = 53/68 (77%), Positives = 60/68 (87%)
Frame = -3
Query: 481 SMKKLYSLIKKCLRPPYGVVYLAPSKKHYVGFNNGARQLRSLVDEEGIFGAHLVKDLADR 302
S+KKLYSLIKKCLRPPYGV+YLA +KK YVGFN+GA+ LR+LVDEE I GAHLVK+ DR
Sbjct: 285 SLKKLYSLIKKCLRPPYGVMYLA-AKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDR 343
Query: 301 DIWKFFHK 278
DIWKFF K
Sbjct: 344 DIWKFFLK 351
>gb|AAL16294.1|AF428364_1 At2g43320/T1O24.6 [Arabidopsis thaliana]
Length = 351
Score = 110 bits (274), Expect = 1e-23
Identities = 53/68 (77%), Positives = 60/68 (87%)
Frame = -3
Query: 481 SMKKLYSLIKKCLRPPYGVVYLAPSKKHYVGFNNGARQLRSLVDEEGIFGAHLVKDLADR 302
S+KKLYSLIKKCLRPPYGV+YLA +KK YVGFN+GA+ LR+LVDEE I GAHLVK+ DR
Sbjct: 285 SLKKLYSLIKKCLRPPYGVMYLA-AKKQYVGFNSGAKHLRNLVDEETILGAHLVKETTDR 343
Query: 301 DIWKFFHK 278
DIWKFF K
Sbjct: 344 DIWKFFLK 351
>pir||F84864 hypothetical protein At2g43320 [imported] - Arabidopsis thaliana
Length = 368
Score = 99.4 bits (246), Expect = 2e-20
Identities = 53/85 (62%), Positives = 60/85 (70%), Gaps = 17/85 (20%)
Frame = -3
Query: 481 SMKKLYSLIKK-----------------CLRPPYGVVYLAPSKKHYVGFNNGARQLRSLV 353
S+KKLYSLIKK CLRPPYGV+YLA +KK YVGFN+GA+ LR+LV
Sbjct: 285 SLKKLYSLIKKWLFPVIMMVVMALLWRQCLRPPYGVMYLA-AKKQYVGFNSGAKHLRNLV 343
Query: 352 DEEGIFGAHLVKDLADRDIWKFFHK 278
DEE I GAHLVK+ DRDIWKFF K
Sbjct: 344 DEETILGAHLVKETTDRDIWKFFLK 368
>ref|NP_567417.1| expressed protein; protein id: At4g14000.1, supported by cDNA:
25991., supported by cDNA: gi_18252964 [Arabidopsis
thaliana] gi|18252965|gb|AAL62409.1| unknown protein
[Arabidopsis thaliana] gi|21389669|gb|AAM48033.1|
unknown protein [Arabidopsis thaliana]
Length = 290
Score = 57.4 bits (137), Expect = 8e-08
Identities = 28/74 (37%), Positives = 44/74 (58%), Gaps = 5/74 (6%)
Frame = -3
Query: 484 NSMKKLYSLIKKCLRPPYGVVYLAPSKKHYVGFNNGARQLRSLVDEEGIFGAHLVKDLAD 305
++ K Y LIK+CL P G VY+A +KK+Y G G RQ S+++++G + LV + D
Sbjct: 218 SAQKSQYELIKRCLAYPDGAVYMA-AKKYYFGVGGGTRQFLSMIEKDGALASTLVSQVTD 276
Query: 304 -----RDIWKFFHK 278
R++WK +K
Sbjct: 277 GSSNVREVWKLSYK 290
>gb|AAM63649.1| unknown [Arabidopsis thaliana]
Length = 290
Score = 57.4 bits (137), Expect = 8e-08
Identities = 28/74 (37%), Positives = 44/74 (58%), Gaps = 5/74 (6%)
Frame = -3
Query: 484 NSMKKLYSLIKKCLRPPYGVVYLAPSKKHYVGFNNGARQLRSLVDEEGIFGAHLVKDLAD 305
++ K Y LIK+CL P G VY+A +KK+Y G G RQ S+++++G + LV + D
Sbjct: 218 SAQKSQYELIKRCLAYPDGAVYMA-AKKYYFGVGGGTRQFLSMIEKDGALASTLVSQVTD 276
Query: 304 -----RDIWKFFHK 278
R++WK +K
Sbjct: 277 GSSNVREVWKLSYK 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,199,043
Number of Sequences: 1393205
Number of extensions: 7738832
Number of successful extensions: 14833
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14825
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
