Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002601A_C01 KMC002601A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177175.2| hypothetical protein; protein id: At1g70180.1, ... 85 6e-16
ref|NP_566300.1| expressed protein; protein id: At3g07170.1, sup... 69 4e-11
ref|NP_199679.1| putative protein; protein id: At5g48680.1 [Arab... 67 2e-10
ref|XP_219374.1| similar to Sec23-interacting protein p125 [Homo... 54 1e-06
gb|AAH46229.1| Similar to Sec23-interacting protein p125 [Mus mu... 54 2e-06
>ref|NP_177175.2| hypothetical protein; protein id: At1g70180.1, supported by cDNA:
gi_17473773 [Arabidopsis thaliana]
gi|17473774|gb|AAL38323.1| unknown protein [Arabidopsis
thaliana]
Length = 460
Score = 85.1 bits (209), Expect = 6e-16
Identities = 44/76 (57%), Positives = 56/76 (72%)
Frame = -2
Query: 579 QLPPSSSVAPRASYAGDEHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALKQMGENDLK 400
QLPP S+ + ++ DE S VDG L+++GLGKY + FK EEVDMT +KQM E+DLK
Sbjct: 382 QLPPLGSIMQNSPFSVDEPLS---VDGFLNSIGLGKYSLAFKREEVDMTTIKQMKESDLK 438
Query: 399 ELGIPMGPRKKILLAL 352
+L IPMGPRKKIL A+
Sbjct: 439 DLIIPMGPRKKILQAI 454
>ref|NP_566300.1| expressed protein; protein id: At3g07170.1, supported by cDNA:
gi_15294217 [Arabidopsis thaliana]
gi|6642648|gb|AAF20229.1|AC012395_16 unknown protein
[Arabidopsis thaliana]
gi|15294218|gb|AAK95286.1|AF410300_1 AT3g07170/T1B9_17
[Arabidopsis thaliana] gi|22655432|gb|AAM98308.1|
At3g07170/T1B9_17 [Arabidopsis thaliana]
Length = 203
Score = 69.3 bits (168), Expect = 4e-11
Identities = 41/84 (48%), Positives = 50/84 (58%)
Frame = -2
Query: 603 KSVASHPXQLPPSSSVAPRASYAGDEHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALK 424
KSVA+ SS + S Q+ +VD L +LGL KY F+ EEVDM AL
Sbjct: 121 KSVATETETRKTSSQATRKKS-----QQADSSVDSFLESLGLEKYSTAFQVEEVDMDALM 175
Query: 423 QMGENDLKELGIPMGPRKKILLAL 352
M ++DLK + IPMGPRKKILLAL
Sbjct: 176 HMTDDDLKAMLIPMGPRKKILLAL 199
>ref|NP_199679.1| putative protein; protein id: At5g48680.1 [Arabidopsis thaliana]
Length = 183
Score = 67.0 bits (162), Expect = 2e-10
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = -2
Query: 522 QSQQTVDGLLHALGLGKYVILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLAL 352
++ +VD L +LGL KY F+ EEVDM AL+ M ++DLK L IPMGPRKKILLAL
Sbjct: 122 KNDASVDSFLESLGLEKYSTAFQVEEVDMDALRHMTDDDLKALLIPMGPRKKILLAL 178
>ref|XP_219374.1| similar to Sec23-interacting protein p125 [Homo sapiens] [Rattus
norvegicus]
Length = 989
Score = 54.3 bits (129), Expect = 1e-06
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = -2
Query: 528 EHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALKQMGENDLKELGIPMGPRKKI 364
E + T+ G L AL L Y+ F+ E++DM +L +DLKE+GIP+GPRKKI
Sbjct: 608 EDEEPLTLHGTLEALSLFDYISTFEKEKIDMESLLMCTVDDLKEMGIPLGPRKKI 662
>gb|AAH46229.1| Similar to Sec23-interacting protein p125 [Mus musculus]
Length = 706
Score = 53.5 bits (127), Expect = 2e-06
Identities = 30/92 (32%), Positives = 50/92 (53%)
Frame = -2
Query: 537 AGDEHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILL 358
+ ++ T++ L L L ++V +F+ E+VD AL + DL+E+GIP+GPRKKIL
Sbjct: 387 SAEDRGDASTLEEDLKKLQLSEFVTVFEKEKVDREALALCTDRDLQEMGIPLGPRKKILN 446
Query: 357 ALMPRTKRPH*LIPGMLDAEIDIVGSSGFFFE 262
R P M +E++I +G + +
Sbjct: 447 HFSARKNSVSINRPAMSASEVNISKENGDYLD 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,877,912
Number of Sequences: 1393205
Number of extensions: 11661389
Number of successful extensions: 30111
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 28583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30109
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
