Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002600A_C01 KMC002600A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194760.1| putative protein; protein id: At4g30310.1 [Arab... 143 1e-33
ref|NP_667574.1| putative sugar kinase [Yersinia pestis KIM] gi|... 69 2e-11
ref|NP_407092.1| putative carbohydrate kinase [Yersinia pestis] ... 69 2e-11
ref|XP_131496.2| RIKEN cDNA 2310009E04 [Mus musculus] 67 9e-11
ref|XP_204124.1| RIKEN cDNA 2310009E04 [Mus musculus] 67 9e-11
>ref|NP_194760.1| putative protein; protein id: At4g30310.1 [Arabidopsis thaliana]
gi|25407622|pir||D85354 hypothetical protein AT4g30310
[imported] - Arabidopsis thaliana
gi|7269931|emb|CAB81024.1| putative protein [Arabidopsis
thaliana]
Length = 569
Score = 143 bits (361), Expect = 1e-33
Identities = 69/86 (80%), Positives = 78/86 (90%)
Frame = -3
Query: 516 DIIGCPIILPRESESVLLGAAILGAVATRKYHSLREAMKALNAPGQVIHPSNDPKVKKYH 337
DI+GCPIILPRESESVLLGAAILGAVA + Y SL +AMKALNA GQV+HPS+DPK+KKYH
Sbjct: 484 DIVGCPIILPRESESVLLGAAILGAVAGKNYPSLHDAMKALNAAGQVVHPSSDPKIKKYH 543
Query: 336 DAKYKIFRGLYEQQLSHRFTMAQALA 259
DAKY+IFR LYEQQLSHR +A+ALA
Sbjct: 544 DAKYRIFRNLYEQQLSHRSIIAEALA 569
>ref|NP_667574.1| putative sugar kinase [Yersinia pestis KIM]
gi|21956907|gb|AAM83825.1|AE013623_2 putative sugar
kinase [Yersinia pestis KIM]
Length = 550
Score = 69.3 bits (168), Expect = 2e-11
Identities = 31/80 (38%), Positives = 53/80 (65%)
Frame = -3
Query: 507 GCPIILPRESESVLLGAAILGAVATRKYHSLREAMKALNAPGQVIHPSNDPKVKKYHDAK 328
GC ++LP ESE++LLG+A++G VA + SL EAM A++ G+ + P + K+K Y+D K
Sbjct: 470 GCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQTN-KIKAYYDRK 528
Query: 327 YKIFRGLYEQQLSHRFTMAQ 268
Y++F +Y + ++ M +
Sbjct: 529 YRVFHQMYHDHMRYQALMQE 548
>ref|NP_407092.1| putative carbohydrate kinase [Yersinia pestis]
gi|25511207|pir||AF0442 probable carbohydrate kinase
YPO3637 [imported] - Yersinia pestis (strain CO92)
gi|15981558|emb|CAC93106.1| putative carbohydrate kinase
[Yersinia pestis CO92]
Length = 545
Score = 69.3 bits (168), Expect = 2e-11
Identities = 31/80 (38%), Positives = 53/80 (65%)
Frame = -3
Query: 507 GCPIILPRESESVLLGAAILGAVATRKYHSLREAMKALNAPGQVIHPSNDPKVKKYHDAK 328
GC ++LP ESE++LLG+A++G VA + SL EAM A++ G+ + P + K+K Y+D K
Sbjct: 465 GCAMLLPEESEAMLLGSAMMGTVAAGVFESLPEAMAAMSRIGKTVTPQTN-KIKAYYDRK 523
Query: 327 YKIFRGLYEQQLSHRFTMAQ 268
Y++F +Y + ++ M +
Sbjct: 524 YRVFHQMYHDHMRYQALMQE 543
>ref|XP_131496.2| RIKEN cDNA 2310009E04 [Mus musculus]
Length = 552
Score = 67.4 bits (163), Expect = 9e-11
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = -3
Query: 516 DIIGCPIILPRESESVLLGAAILGAVATRKYHSLREAMKALNAPGQVIHPSNDPKVKKYH 337
DI G P++L +E ESVL+GAAILGA A+ + S++EAM ++ G+V+ P + KKY+
Sbjct: 471 DITGMPVVLSQEVESVLVGAAILGACASGDFTSVQEAMARMSKVGKVVFPEHAD--KKYY 528
Query: 336 DAKYKIFRGLYEQQLSHRFTM 274
D KY++F + E Q + M
Sbjct: 529 DKKYQVFLRMVEHQKEYSAIM 549
>ref|XP_204124.1| RIKEN cDNA 2310009E04 [Mus musculus]
Length = 232
Score = 67.4 bits (163), Expect = 9e-11
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = -3
Query: 516 DIIGCPIILPRESESVLLGAAILGAVATRKYHSLREAMKALNAPGQVIHPSNDPKVKKYH 337
DI G P++L +E ESVL+GAAILGA A+ + S++EAM ++ G+V+ P + KKY+
Sbjct: 151 DITGMPVVLSQEVESVLVGAAILGACASGDFTSVQEAMARMSKVGKVVFPEHAD--KKYY 208
Query: 336 DAKYKIFRGLYEQQLSHRFTM 274
D KY++F + E Q + M
Sbjct: 209 DKKYQVFLRMVEHQKEYSAIM 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,614,066
Number of Sequences: 1393205
Number of extensions: 9428136
Number of successful extensions: 21646
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 20877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21603
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
