Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002599A_C01 KMC002599A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90151.1| katanin p60 subunit A 1-like [Oryza sativa (japo... 135 4e-31
pir||B84758 probable katanin [imported] - Arabidopsis thaliana 130 1e-29
ref|NP_565791.1| putative katanin; protein id: At2g34560.1, supp... 130 1e-29
dbj|BAB84381.1| putative katanin [Oryza sativa (japonica cultiva... 122 2e-27
emb|CAC14616.1| probable AAA ATPase [Leishmania major] gi|110718... 50 2e-05
>dbj|BAB90151.1| katanin p60 subunit A 1-like [Oryza sativa (japonica
cultivar-group)]
Length = 428
Score = 135 bits (339), Expect = 4e-31
Identities = 62/77 (80%), Positives = 72/77 (92%)
Frame = -1
Query: 541 SGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHL 362
SGSDIRL+CKE AMQPLRRLMS LE R++LVPEEELP+VGP++PEDI+ AL+NTRPSAHL
Sbjct: 347 SGSDIRLVCKEAAMQPLRRLMSVLEARDELVPEEELPEVGPLKPEDIEVALRNTRPSAHL 406
Query: 361 HAHKYDKFNADYGSQIL 311
HAH+Y+KFN DYGSQIL
Sbjct: 407 HAHRYEKFNQDYGSQIL 423
>pir||B84758 probable katanin [imported] - Arabidopsis thaliana
Length = 393
Score = 130 bits (326), Expect = 1e-29
Identities = 61/78 (78%), Positives = 68/78 (86%)
Frame = -1
Query: 541 SGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHL 362
SGSDIR+LCKE AMQPLRR ++ LE RED+VPE+ELPK+GPI PEDI AL NTRPSAHL
Sbjct: 316 SGSDIRILCKEAAMQPLRRTLAILEDREDVVPEDELPKIGPILPEDIDRALSNTRPSAHL 375
Query: 361 HAHKYDKFNADYGSQILQ 308
HAH YDKFN DYGSQIL+
Sbjct: 376 HAHLYDKFNDDYGSQILK 393
>ref|NP_565791.1| putative katanin; protein id: At2g34560.1, supported by cDNA:
119620. [Arabidopsis thaliana]
gi|20197082|gb|AAC26698.2| putative katanin [Arabidopsis
thaliana] gi|21537081|gb|AAM61422.1| putative katanin
[Arabidopsis thaliana]
Length = 384
Score = 130 bits (326), Expect = 1e-29
Identities = 61/78 (78%), Positives = 68/78 (86%)
Frame = -1
Query: 541 SGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHL 362
SGSDIR+LCKE AMQPLRR ++ LE RED+VPE+ELPK+GPI PEDI AL NTRPSAHL
Sbjct: 307 SGSDIRILCKEAAMQPLRRTLAILEDREDVVPEDELPKIGPILPEDIDRALSNTRPSAHL 366
Query: 361 HAHKYDKFNADYGSQILQ 308
HAH YDKFN DYGSQIL+
Sbjct: 367 HAHLYDKFNDDYGSQILK 384
>dbj|BAB84381.1| putative katanin [Oryza sativa (japonica cultivar-group)]
gi|21644619|dbj|BAC01178.1| putative katanin [Oryza
sativa (japonica cultivar-group)]
Length = 411
Score = 122 bits (307), Expect = 2e-27
Identities = 56/77 (72%), Positives = 67/77 (86%)
Frame = -1
Query: 541 SGSDIRLLCKEVAMQPLRRLMSQLEQREDLVPEEELPKVGPIRPEDIQAALKNTRPSAHL 362
SGSDIRL+CKE AMQPLRRLMS LE R++ VPE+ELP+VGP+ EDI+ AL+NTRPSAHL
Sbjct: 334 SGSDIRLVCKEAAMQPLRRLMSVLEGRQEEVPEDELPEVGPVTTEDIELALRNTRPSAHL 393
Query: 361 HAHKYDKFNADYGSQIL 311
H H+Y+KFN DYGS +L
Sbjct: 394 HVHRYEKFNQDYGSHVL 410
>emb|CAC14616.1| probable AAA ATPase [Leishmania major] gi|11071813|emb|CAC14315.2|
probable katanin-like protein [Leishmania major]
Length = 565
Score = 49.7 bits (117), Expect = 2e-05
Identities = 32/81 (39%), Positives = 48/81 (58%), Gaps = 7/81 (8%)
Frame = -1
Query: 541 SGSDIRLLCKEVAMQPLRRLMSQLEQR-EDLVPEEELPKVGPIRP-----EDIQAALKNT 380
SG+DI ++C+E M+P+R+L+SQLE D LP P+RP ED+QA++ T
Sbjct: 482 SGADIDVVCREAMMRPVRKLISQLEAAGNDRNAHARLPS-EPLRPPAATLEDVQASVACT 540
Query: 379 RPSAHL-HAHKYDKFNADYGS 320
R S + KYD + ++GS
Sbjct: 541 RSSVRVADLDKYDVWTREHGS 561
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,655,895
Number of Sequences: 1393205
Number of extensions: 8153927
Number of successful extensions: 34366
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 33677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34351
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
