Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002597A_C01 KMC002597A_c01
(404 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42443.1| unknown protein [Arabidopsis thaliana] 75 2e-24
ref|NP_680200.1| hypothetical protein; protein id: At5g22140.1 [... 75 2e-24
ref|NP_190005.1| putative protein; protein id: At3g44190.1, supp... 70 2e-13
ref|NP_630578.1| putative dehydrogenase [Streptomyces coelicolor... 39 0.020
ref|NP_344210.1| Oxidoreductase [Sulfolobus solfataricus] gi|253... 38 0.026
>dbj|BAC42443.1| unknown protein [Arabidopsis thaliana]
Length = 365
Score = 74.7 bits (182), Expect(2) = 2e-24
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +1
Query: 88 KKVVIVGGGVAGAVLAKTLQHQASVTLIDPKEYFEIPWATLRAMVEPSXCRK 243
K+VV++GGG+AG++ AK LQ A VTLIDPKEYFEI WA+LR+MVEP +
Sbjct: 12 KRVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEPKFAER 63
Score = 57.8 bits (138), Expect(2) = 2e-24
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +2
Query: 233 FAERIVVNHREYFTKGDLVISSAINISETEVFTKDGQQIAYDYXCRCNWPLRLFPQ 400
FAER V+NH+ Y +G LV S AINI+E++V T+DG I YDY LFP+
Sbjct: 60 FAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPK 115
>ref|NP_680200.1| hypothetical protein; protein id: At5g22140.1 [Arabidopsis
thaliana] gi|13374873|emb|CAC34507.1| putative protein
[Arabidopsis thaliana]
Length = 365
Score = 74.7 bits (182), Expect(2) = 2e-24
Identities = 33/52 (63%), Positives = 42/52 (80%)
Frame = +1
Query: 88 KKVVIVGGGVAGAVLAKTLQHQASVTLIDPKEYFEIPWATLRAMVEPSXCRK 243
K+VV++GGG+AG++ AK LQ A VTLIDPKEYFEI WA+LR+MVEP +
Sbjct: 12 KRVVVIGGGIAGSLAAKLLQFDAEVTLIDPKEYFEITWASLRSMVEPKFAER 63
Score = 57.8 bits (138), Expect(2) = 2e-24
Identities = 28/56 (50%), Positives = 36/56 (64%)
Frame = +2
Query: 233 FAERIVVNHREYFTKGDLVISSAINISETEVFTKDGQQIAYDYXCRCNWPLRLFPQ 400
FAER V+NH+ Y +G LV S AINI+E++V T+DG I YDY LFP+
Sbjct: 60 FAERTVINHKSYLKQGRLVTSPAINITESDVMTEDGSVIGYDYLVIATGHNDLFPK 115
>ref|NP_190005.1| putative protein; protein id: At3g44190.1, supported by cDNA:
114123. [Arabidopsis thaliana] gi|11357666|pir||T49135
hypothetical protein F26G5.140 - Arabidopsis thaliana
gi|7635464|emb|CAB88427.1| putative protein [Arabidopsis
thaliana] gi|21536882|gb|AAM61214.1| unknown
[Arabidopsis thaliana] gi|25083044|gb|AAN72037.1|
putative protein [Arabidopsis thaliana]
Length = 367
Score = 70.5 bits (171), Expect(2) = 2e-13
Identities = 30/61 (49%), Positives = 46/61 (75%)
Frame = +1
Query: 88 KKVVIVGGGVAGAVLAKTLQHQASVTLIDPKEYFEIPWATLRAMVEPSXCRKDCSQPQRV 267
K+V+++GGG+AG++ +K LQ + +TLIDPKEYFEI WA+LR+MVEP+ + ++
Sbjct: 12 KRVIVIGGGIAGSLASKFLQFDSDLTLIDPKEYFEIIWASLRSMVEPAFAERSVINHKKY 71
Query: 268 L 270
L
Sbjct: 72 L 72
Score = 51.6 bits (122), Expect = 2e-06
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +2
Query: 233 FAERIVVNHREYFTKGDLVISSAINISETEVFTKDGQQIAYDY 361
FAER V+NH++Y G +V S A+NI++T+V T DG YDY
Sbjct: 60 FAERSVINHKKYLQNGRVVTSPAVNITDTDVLTADGLVFGYDY 102
Score = 25.0 bits (53), Expect(2) = 2e-13
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 366 VVATGHSDFFPKT 404
V+ATGH+D PKT
Sbjct: 104 VIATGHNDVLPKT 116
>ref|NP_630578.1| putative dehydrogenase [Streptomyces coelicolor A3(2)]
gi|7480581|pir||T34726 probable dehydrogenase -
Streptomyces coelicolor gi|3861428|emb|CAA22033.1|
putative dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 629
Score = 38.5 bits (88), Expect = 0.020
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Frame = +1
Query: 79 MVEKKVVIVGGGVAGAVLAKTL----QHQASVTLIDPKEYF 189
M ++VIVG G AG A+TL +HQA +TL++P +YF
Sbjct: 1 MSRPRIVIVGAGFAGYRTARTLSRLTRHQADITLLNPTDYF 41
>ref|NP_344210.1| Oxidoreductase [Sulfolobus solfataricus] gi|25394197|pir||A99468
oxidoreductase [imported] - Sulfolobus solfataricus
gi|13816257|gb|AAK43000.1| Oxidoreductase [Sulfolobus
solfataricus]
Length = 367
Score = 38.1 bits (87), Expect = 0.026
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 88 KKVVIVGGGVAGAVLAKTLQHQASVTLIDPKEY 186
K++V+VGGG AG ++A L + VT+I+P EY
Sbjct: 2 KRLVVVGGGNAGTLIANLLADKLEVTVIEPNEY 34
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,567,231
Number of Sequences: 1393205
Number of extensions: 7456924
Number of successful extensions: 29819
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 29053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29791
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
