Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002593A_C01 KMC002593A_c01
(680 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64912.1| unknown [Arabidopsis thaliana] 172 2e-47
ref|NP_196094.1| putative protein; protein id: At5g04740.1, supp... 172 2e-47
ref|NP_564010.1| expressed protein; protein id: At1g16880.1, sup... 140 3e-33
sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase (PII urid... 46 5e-04
gb|AAF17352.1|AF155830_1 putative uridylyltransferase/uridylyl-r... 46 5e-04
>gb|AAM64912.1| unknown [Arabidopsis thaliana]
Length = 301
Score = 172 bits (437), Expect(3) = 2e-47
Identities = 86/102 (84%), Positives = 95/102 (92%)
Frame = -3
Query: 678 LERIRLTIISNLLKYHPESSEQLAMGEVFGIKAPVKKLDLDFATRIQVKEDGPKRSLLYI 499
LE+IRLTII+NLLKYHPE SEQLAMGE FGIKAP KK+D+D AT I VKEDGPKRSLL I
Sbjct: 168 LEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVI 227
Query: 498 ETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVT 373
ETADRPGL+VE+IKV+ADVNIDVESAEIDTEGL+AKDKFHV+
Sbjct: 228 ETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVS 269
Score = 37.0 bits (84), Expect = 0.25
Identities = 15/58 (25%), Positives = 34/58 (57%), Gaps = 1/58 (1%)
Frame = -3
Query: 543 IQVKEDG-PKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVT 373
+ + +D P+ +++ + +R G L++ ++ + D+ +DV + TEG I + KF +T
Sbjct: 97 VMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154
Score = 35.4 bits (80), Expect(3) = 2e-47
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -2
Query: 322 CLRYYLRTPETDIDSY 275
CLRY+LR PETDIDSY
Sbjct: 286 CLRYFLRRPETDIDSY 301
Score = 24.3 bits (51), Expect(3) = 2e-47
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 383 FMSRYGGAALNSSMSQVLV 327
F Y G ALN S+SQVLV
Sbjct: 266 FHVSYQGQALNRSLSQVLV 284
>ref|NP_196094.1| putative protein; protein id: At5g04740.1, supported by cDNA:
34592., supported by cDNA: gi_18252932 [Arabidopsis
thaliana] gi|11281139|pir||T48470 hypothetical protein
T1E3.100 - Arabidopsis thaliana
gi|7413536|emb|CAB86016.1| putative protein [Arabidopsis
thaliana] gi|9758449|dbj|BAB08978.1|
gene_id:MUK11.6~unknown protein [Arabidopsis thaliana]
gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis
thaliana] gi|21389645|gb|AAM48021.1| putative protein
[Arabidopsis thaliana]
Length = 301
Score = 172 bits (437), Expect(3) = 2e-47
Identities = 86/102 (84%), Positives = 95/102 (92%)
Frame = -3
Query: 678 LERIRLTIISNLLKYHPESSEQLAMGEVFGIKAPVKKLDLDFATRIQVKEDGPKRSLLYI 499
LE+IRLTII+NLLKYHPE SEQLAMGE FGIKAP KK+D+D AT I VKEDGPKRSLL I
Sbjct: 168 LEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVI 227
Query: 498 ETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVT 373
ETADRPGL+VE+IKV+ADVNIDVESAEIDTEGL+AKDKFHV+
Sbjct: 228 ETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVS 269
Score = 37.0 bits (84), Expect = 0.25
Identities = 15/58 (25%), Positives = 34/58 (57%), Gaps = 1/58 (1%)
Frame = -3
Query: 543 IQVKEDG-PKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVT 373
+ + +D P+ +++ + +R G L++ ++ + D+ +DV + TEG I + KF +T
Sbjct: 97 VMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154
Score = 35.4 bits (80), Expect(3) = 2e-47
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -2
Query: 322 CLRYYLRTPETDIDSY 275
CLRY+LR PETDIDSY
Sbjct: 286 CLRYFLRRPETDIDSY 301
Score = 24.3 bits (51), Expect(3) = 2e-47
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 383 FMSRYGGAALNSSMSQVLV 327
F Y G ALN S+SQVLV
Sbjct: 266 FHVSYQGQALNRSLSQVLV 284
>ref|NP_564010.1| expressed protein; protein id: At1g16880.1, supported by cDNA:
gi_14423501 [Arabidopsis thaliana]
gi|25344189|pir||B86304 hypothetical protein F6I1.12
[imported] - Arabidopsis thaliana
gi|9802776|gb|AAF99845.1|AC051629_12 Unknown protein
[Arabidopsis thaliana]
gi|14423502|gb|AAK62433.1|AF386988_1 Unknown protein
[Arabidopsis thaliana]
Length = 290
Score = 140 bits (353), Expect(2) = 3e-33
Identities = 64/102 (62%), Positives = 86/102 (83%)
Frame = -3
Query: 678 LERIRLTIISNLLKYHPESSEQLAMGEVFGIKAPVKKLDLDFATRIQVKEDGPKRSLLYI 499
LE IRLT+I+NLL++HPESS QLAMG FG+ P + +D+D AT I +++DGP RSLL+I
Sbjct: 157 LEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPIDVDIATHITIEDDGPDRSLLFI 216
Query: 498 ETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVT 373
E+ADRPGLLVE++K+I+D+++ VES E DTEGL+AK KFHV+
Sbjct: 217 ESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKVKFHVS 258
Score = 23.5 bits (49), Expect(2) = 3e-33
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 319 LRYYLRTPETDIDSY 275
LRY+LR P TD S+
Sbjct: 276 LRYFLRRPSTDESSF 290
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase (PII uridylyl-transferase)
(Uridylyl removing enzyme) (UTase)
Length = 944
Score = 45.8 bits (107), Expect = 5e-04
Identities = 22/49 (44%), Positives = 34/49 (68%)
Frame = -3
Query: 519 KRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVT 373
K +++ +E DRPGLL EI V++D+++D++SA I T G D F+VT
Sbjct: 836 KFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
>gb|AAF17352.1|AF155830_1 putative uridylyltransferase/uridylyl-removing enzyme [Rhizobium
leguminosarum bv. viciae]
Length = 968
Score = 45.8 bits (107), Expect = 5e-04
Identities = 22/49 (44%), Positives = 34/49 (68%)
Frame = -3
Query: 519 KRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLIAKDKFHVT 373
K +++ +E DRPGLL EI V++D+++D++SA I T G D F+VT
Sbjct: 860 KFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 908
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,776,250
Number of Sequences: 1393205
Number of extensions: 11077534
Number of successful extensions: 21832
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 21225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21826
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
