Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002590A_C01 KMC002590A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis ... 50 1e-05
dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum] 50 1e-05
ref|NP_192652.1| putative protein; protein id: At4g09130.1 [Arab... 46 3e-04
ref|NP_181044.1| putative RING zinc finger protein; protein id: ... 45 8e-04
gb|AAM60957.1| RING-H2 zinc finger protein-like [Arabidopsis tha... 44 0.002
>gb|AAO45753.1| RING/C3HC4/PHD zinc finger-like protein [Cucumis melo]
Length = 379
Score = 50.4 bits (119), Expect = 1e-05
Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Frame = -3
Query: 537 HSLVVLPAEDCERFTLRLPDEVRSQMLSSTALKRAKSCVSFTRMSSGTWGYR-----TRS 373
HSLV P ED ERFTLRLP E+R Q++ + L RA S V R SS GYR S
Sbjct: 255 HSLVQ-PGEDTERFTLRLPVEIRKQVV-NRKLHRATSMVVLARQSSSMRGYRFGSGEGSS 312
Query: 372 VGRF---------GSDHEQWGCTLTPPNF 313
G++ S ++W ++TPP F
Sbjct: 313 RGKYYRRLERLDRTSKSDRWVLSMTPPFF 341
>dbj|BAC23030.1| ring H2 zinc finger [Solanum tuberosum]
Length = 154
Score = 50.4 bits (119), Expect = 1e-05
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 16/91 (17%)
Frame = -3
Query: 537 HSLVVLPAEDCERFTLRLPDEVRSQMLSSTALKRAKSC-VSFTRMSSGTWGYR------- 382
HSLVV P E+ +R+TLRLP++VR ++ L R +SC V+ R S T GYR
Sbjct: 9 HSLVV-PGENLDRYTLRLPEKVRKDVMDRALLNRTRSCAVTLPRHGSTTRGYRAGPGEGS 67
Query: 381 ---TRS---VGRFGSD--HEQWGCTLTPPNF 313
TRS + RF + ++W + PP F
Sbjct: 68 NRGTRSFKRIDRFDPEAKSDRWFLKIAPPFF 98
>ref|NP_192652.1| putative protein; protein id: At4g09130.1 [Arabidopsis thaliana]
gi|25407486|pir||E85092 hypothetical protein AT4g09130
[imported] - Arabidopsis thaliana
gi|7267556|emb|CAB78037.1| putative protein [Arabidopsis
thaliana]
Length = 357
Score = 46.2 bits (108), Expect = 3e-04
Identities = 29/70 (41%), Positives = 42/70 (59%)
Frame = -3
Query: 537 HSLVVLPAEDCERFTLRLPDEVRSQMLSSTALKRAKSCVSFTRMSSGTWGYRTRSVGRFG 358
HSLV P ++ +RFTL+LP+EV+ Q++S +KR S ++ R S GYR+ SVG
Sbjct: 240 HSLVQ-PCQNIDRFTLQLPEEVQRQLVSLNLIKR--SHIALPRARSSRQGYRSGSVGNER 296
Query: 357 SDHEQWGCTL 328
+ Q TL
Sbjct: 297 TGFSQGRQTL 306
>ref|NP_181044.1| putative RING zinc finger protein; protein id: At2g34990.1
[Arabidopsis thaliana] gi|7459591|pir||T00480 probable
RING zinc finger protein At2g34990 [imported] -
Arabidopsis thaliana gi|3033394|gb|AAC12838.1| putative
RING zinc finger protein [Arabidopsis thaliana]
Length = 302
Score = 44.7 bits (104), Expect = 8e-04
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = -3
Query: 528 VVLPAEDCERFTLRLPDEVRSQMLSSTALKRAKSCVSFTRMSSGTWGYRTRSVG 367
VV P ++ +RFTLRLP+EVR Q+ K+ V+F++ S GYR+RS G
Sbjct: 205 VVQPLDNLDRFTLRLPEEVRRQL-----TKKTVDNVAFSQARSSRRGYRSRSAG 253
>gb|AAM60957.1| RING-H2 zinc finger protein-like [Arabidopsis thaliana]
Length = 368
Score = 43.5 bits (101), Expect = 0.002
Identities = 26/74 (35%), Positives = 41/74 (55%)
Frame = -3
Query: 528 VVLPAEDCERFTLRLPDEVRSQMLSSTALKRAKSCVSFTRMSSGTWGYRTRSVGRFGSDH 349
VVLP E +RFTLR+P+E+R +++++ L R+ S R S G + V R +
Sbjct: 214 VVLPGESTDRFTLRVPEELRKKIMANWKLNRSNSVFVLPRGGSSRSG---KQVDRSRAKS 270
Query: 348 EQWGCTLTPPNFGW 307
++W T P+F W
Sbjct: 271 DRWLFRKT-PSFLW 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,405,072
Number of Sequences: 1393205
Number of extensions: 10499642
Number of successful extensions: 40900
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 35749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40234
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
