Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002589A_C01 KMC002589A_c01
(349 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42858|PAL2_IPOBA Phenylalanine ammonia-lyase gi|7437130|pir|... 60 5e-09
sp|P45730|PALY_POPTR Phenylalanine ammonia-lyase gi|541843|pir||... 60 7e-09
sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase gi|556424|gb|AA... 60 7e-09
pir||S48726 phenylalanine ammonia-lyase (EC 4.3.1.5) 3 - parsley 60 9e-09
sp|P45729|PAL3_PETCR Phenylalanine ammonia-lyase 3 gi|535008|emb... 60 9e-09
>sp|Q42858|PAL2_IPOBA Phenylalanine ammonia-lyase gi|7437130|pir||T10909 phenylalanine
ammonia-lyase (EC 4.3.1.5) - sweet potato
gi|1122743|dbj|BAA11459.1| Phenylalanine Ammonia-Lyase
[Ipomoea batatas]
Length = 708
Score = 60.5 bits (145), Expect = 5e-09
Identities = 34/52 (65%), Positives = 37/52 (70%)
Frame = -3
Query: 347 ECRSYPLYKFVREELGTELLTW*KVQVTR*GV*QTVHTQYATGKIIDPLLEC 192
ECRSYPLYKFVREELGTE+LT KV+ + V V T G IIDPLLEC
Sbjct: 646 ECRSYPLYKFVREELGTEMLTGEKVK-SPGEVCDKVFTAVCDGGIIDPLLEC 696
Score = 37.4 bits (85), Expect = 0.049
Identities = 21/43 (48%), Positives = 25/43 (57%)
Frame = -1
Query: 283 GEKSRSPGEEFDKLFTRNMPRVKL*ILFWNALGEWNGAPLPIC 155
GEK +SPGE DK+FT + L L W+GAPLPIC
Sbjct: 667 GEKVKSPGEVCDKVFTAVCDGGIIDPLL-ECLKSWDGAPLPIC 708
>sp|P45730|PALY_POPTR Phenylalanine ammonia-lyase gi|541843|pir||JQ2265 phenylalanine
ammonia-lyase (EC 4.3.1.5) - western balsam poplar x
cottonwood gi|169454|gb|AAA33805.1| phenylalanine
ammonia lyase [Populus balsamifera subsp. trichocarpa x
Populus deltoides]
Length = 715
Score = 60.1 bits (144), Expect = 7e-09
Identities = 34/52 (65%), Positives = 35/52 (66%)
Frame = -3
Query: 347 ECRSYPLYKFVREELGTELLTW*KVQVTR*GV*QTVHTQYATGKIIDPLLEC 192
ECRSYPLYKFVREELGT LLT KVQ V T GKIIDP+LEC
Sbjct: 653 ECRSYPLYKFVREELGTVLLTGEKVQSPGEEF-DKVFTAMCQGKIIDPMLEC 703
Score = 52.0 bits (123), Expect = 2e-06
Identities = 26/43 (60%), Positives = 31/43 (71%)
Frame = -1
Query: 283 GEKSRSPGEEFDKLFTRNMPRVKL*ILFWNALGEWNGAPLPIC 155
GEK +SPGEEFDK+FT M + K+ LGEWNG+PLPIC
Sbjct: 674 GEKVQSPGEEFDKVFTA-MCQGKIIDPMLECLGEWNGSPLPIC 715
>sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase gi|556424|gb|AAA99500.1| phenylalanine
ammonia lyase
Length = 715
Score = 60.1 bits (144), Expect = 7e-09
Identities = 33/52 (63%), Positives = 36/52 (68%)
Frame = -3
Query: 347 ECRSYPLYKFVREELGTELLTW*KVQVTR*GV*QTVHTQYATGKIIDPLLEC 192
ECRSYPLYKFVREELGTE+LT KV+ + T GKIIDPLLEC
Sbjct: 653 ECRSYPLYKFVREELGTEMLTGEKVRSPGEEC-DKLFTAMCQGKIIDPLLEC 703
Score = 51.2 bits (121), Expect = 3e-06
Identities = 26/43 (60%), Positives = 30/43 (69%)
Frame = -1
Query: 283 GEKSRSPGEEFDKLFTRNMPRVKL*ILFWNALGEWNGAPLPIC 155
GEK RSPGEE DKLFT M + K+ +GEWNGAPLP+C
Sbjct: 674 GEKVRSPGEECDKLFTA-MCQGKIIDPLLECIGEWNGAPLPLC 715
>pir||S48726 phenylalanine ammonia-lyase (EC 4.3.1.5) 3 - parsley
Length = 718
Score = 59.7 bits (143), Expect = 9e-09
Identities = 33/52 (63%), Positives = 37/52 (70%)
Frame = -3
Query: 347 ECRSYPLYKFVREELGTELLTW*KVQVTR*GV*QTVHTQYATGKIIDPLLEC 192
ECRSYPLYKFVREELGTE LT KV+ + V T + G+IIDPLLEC
Sbjct: 656 ECRSYPLYKFVREELGTEYLTGEKVRSPGEEF-EKVFTAMSKGEIIDPLLEC 706
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/43 (55%), Positives = 29/43 (66%)
Frame = -1
Query: 283 GEKSRSPGEEFDKLFTRNMPRVKL*ILFWNALGEWNGAPLPIC 155
GEK RSPGEEF+K+FT M + ++ L WNGAPLPIC
Sbjct: 677 GEKVRSPGEEFEKVFTA-MSKGEIIDPLLECLESWNGAPLPIC 718
>sp|P45729|PAL3_PETCR Phenylalanine ammonia-lyase 3 gi|535008|emb|CAA57057.1|
phenylalanine ammonia-lyase 3 [Petroselinum crispum]
Length = 718
Score = 59.7 bits (143), Expect = 9e-09
Identities = 33/52 (63%), Positives = 37/52 (70%)
Frame = -3
Query: 347 ECRSYPLYKFVREELGTELLTW*KVQVTR*GV*QTVHTQYATGKIIDPLLEC 192
ECRSYPLYKFVREELGTE LT KV+ + V T + G+IIDPLLEC
Sbjct: 656 ECRSYPLYKFVREELGTEYLTGEKVRSPGEEF-EKVFTAMSKGEIIDPLLEC 706
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/43 (55%), Positives = 29/43 (66%)
Frame = -1
Query: 283 GEKSRSPGEEFDKLFTRNMPRVKL*ILFWNALGEWNGAPLPIC 155
GEK RSPGEEF+K+FT M + ++ L WNGAPLPIC
Sbjct: 677 GEKVRSPGEEFEKVFTA-MSKGEIIDPLLECLESWNGAPLPIC 718
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 320,004,725
Number of Sequences: 1393205
Number of extensions: 6713157
Number of successful extensions: 16214
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 15608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16026
length of database: 448,689,247
effective HSP length: 91
effective length of database: 321,907,592
effective search space used: 7725782208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
